C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TruB pseudouridine (psi) synthase homolog 1 (E. coli)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000053805 trub1 7955 - 12:31612180-31619661 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000075889 trub1-001 31612180-31619653 protein_coding
  ENSDART00000148847 trub1-002 31612397-31619661 protein_coding
  ENSDART00000149077 trub1-003 31612356-31619661 nonsense_mediated_decay
  ENSDART00000150220 trub1-004 31612675-31619564 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000075889
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000075889 1.554±0.72 0.999±0.25 6.643±1.40 0.449±0.00 0.397±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001522 IEA pseudouridine synthesis
GO:0003723 IEA RNA binding
GO:0005575 ND cellular_component
GO:0006396 IEA RNA processing
GO:0009451 IEA RNA modification
GO:0009982 IEA pseudouridine synthase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000165832 TRUB1 TruB pseudouridine (psi) synthase family member 1 protein_coding Homo_sapiens
ENSMUSG00000025086 Trub1 TruB pseudouridine (psi) synthase homolog 1 (E. coli) protein_coding Mus_musculus

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