C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TruB pseudouridine (psi) synthase homolog 1 (E. coli)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025086 Trub1 10090 + 19:57452906-57491005 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026072 Trub1-201 57452906-57488910 protein_coding
  ENSMUST00000026073 Trub1-202 57452906-57491005 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026072ENSMUST00000026073
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026072 1.916±0.60 2.032±0.39 3.936±0.64 3.259±0.66 1.630±0.47 0.961±0.29 0.646±0.09 0.750±0.13 1.713±0.75 1.176±0.05 1.237±0.11 2.498±1.01 1.710±0.43 0.505±0.06
ENSMUST00000026073 2.542±0.80 5.976±0.88 2.447±0.32 3.211±0.87 2.335±1.03 1.840±0.40 0.955±0.06 2.634±0.29 3.062±0.41 1.342±0.13 0.934±0.20 3.578±1.27 1.835±0.60 0.518±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00019G CIL_00019G_0002 CGP 19:57361009-57491005
CIL_0002OD CIL_0002OD_0002 CGP 19:57452906-58133338

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001522 IEA pseudouridine synthesis
GO:0003723 IEA RNA binding
GO:0005575 ND cellular_component
GO:0008033 IEA tRNA processing
GO:0009982 IEA pseudouridine synthase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053805 trub1 TruB pseudouridine (psi) synthase homolog 1 (E. coli) protein_coding Danio_rerio
ENSG00000165832 TRUB1 TruB pseudouridine (psi) synthase family member 1 protein_coding Homo_sapiens

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