C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TruB pseudouridine (psi) synthase family member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165832 TRUB1 9606 + 10:114938193-114977676 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000298746 TRUB1-001 114938193-114977676 protein_coding
  ENST00000485065 TRUB1-002 114938386-114960000 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000298746ENST00000485065
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000298746 1.317±0.00 2.673±0.00 1.560±0.00 7.686±1.77 2.386±0.86 2.342±0.38 3.100±0.17 3.765±1.50 2.705±0.56 1.698±0.74 1.169±0.00 4.945±0.99 1.737±0.16 8.041±1.27
ENST00000485065 N/A N/A 2.188±0.00 N/A N/A N/A N/A 2.922±0.00 N/A N/A N/A 13.290±0.00 6.238±0.00 12.043±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00019G CIL_00019G_0001 CGP 10:114821744-114977676
CIL_0002OD CIL_0002OD_0001 CGP 10:114938193-115948992

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001522 IEA pseudouridine synthesis
GO:0003723 IEA RNA binding
GO:0006396 IEA RNA processing
GO:0008033 IEA tRNA processing
GO:0009451 IEA RNA modification
GO:0009982 IEA pseudouridine synthase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053805 trub1 TruB pseudouridine (psi) synthase homolog 1 (E. coli) protein_coding Danio_rerio
ENSMUSG00000025086 Trub1 TruB pseudouridine (psi) synthase homolog 1 (E. coli) protein_coding Mus_musculus

Loading