C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: visual system homeobox 1 homolog, chx10-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000056292 vsx1 7955 - 17:20893556-20896258 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000078763 vsx1-201 20893557-20896228 protein_coding
  ENSDART00000104327 vsx1-001 20893556-20896258 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLiverENSDART00000078763ENSDART00000104327
Transcript ID Brain Kidney Liver
ENSDART00000078763 0.030±0.00 0.772±0.17 0.032±0.00
ENSDART00000104327 0.026±0.00 0.268±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004MS CIL_0004MS_0001 CGP 17:20893556-20953728

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000100987 VSX1 visual system homeobox 1 protein_coding Homo_sapiens
ENSMUSG00000033080 Vsx1 visual system homeobox 1 homolog (zebrafish) protein_coding Mus_musculus

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