C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: visual system homeobox 1 homolog (zebrafish)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033080 Vsx1 10090 - 2:150680702-150689360 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000046095 Vsx1-001 150680702-150689360 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastLiverOvaryPlacentaTestisENSMUST00000046095
Transcript ID Adipose Bladder Brain Breast Liver Ovary Placenta Testis
ENSMUST00000046095 0.011±0.00 0.002±0.00 0.028±0.02 0.013±0.00 0.008±0.00 0.076±0.04 0.001±0.00 0.019±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00023G CIL_00023G_0002 CGP 2:150618105-150689360
CIL_0004MS CIL_0004MS_0003 CGP 2:150680702-150771675

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007601 IMP visual perception
GO:0042551 IGI neuron maturation
GO:0043565 IEA sequence-specific DNA binding
GO:0048666 IMP neuron development
GO:0050896 IEA response to stimulus
GO:0060040 IMP retinal bipolar neuron differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056292 vsx1 visual system homeobox 1 homolog, chx10-like protein_coding Danio_rerio
ENSG00000100987 VSX1 visual system homeobox 1 protein_coding Homo_sapiens

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