C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: visual system homeobox 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100987 VSX1 9606 - 20:25070885-25082365 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000376707 VSX1-002 25078548-25082131 protein_coding
  ENST00000376709 VSX1-001 25075436-25082365 protein_coding
  ENST00000409285 VSX1-005 25071484-25082131 nonsense_mediated_decay
  ENST00000409958 VSX1-006 25071484-25082131 nonsense_mediated_decay
  ENST00000429762 VSX1-003 25070885-25082131 protein_coding
  ENST00000444511 VSX1-004 25071484-25082131 protein_coding
  ENST00000557285 VSX1-007 25076308-25077999 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverOvaryPlacentaTestisENST00000376709ENST00000409285ENST00000409958ENST00000429762ENST00000444511ENST00000557285
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Ovary Placenta Testis
ENST00000376709 0.023±0.00 N/A N/A 0.007±0.00 0.070±0.05 0.007±0.00 N/A 0.019±0.00 0.026±0.00 0.024±0.01
ENST00000409285 N/A N/A 0.222±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000409958 N/A N/A N/A N/A N/A 0.066±0.00 0.067±0.00 N/A N/A 0.065±0.00
ENST00000429762 0.021±0.00 0.011±0.00 0.419±0.28 0.022±0.00 0.051±0.00 N/A 0.027±0.00 0.099±0.05 N/A 0.077±0.02
ENST00000444511 N/A N/A 0.328±0.00 N/A N/A N/A N/A N/A 0.048±0.00 N/A
ENST00000557285 N/A N/A N/A N/A 0.366±0.00 N/A N/A 0.167±0.00 N/A 0.171±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00023G CIL_00023G_0001 CGP 20:25006230-25082365
CIL_0004MS CIL_0004MS_0002 CGP 20:25070885-25226729

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007601 IEA visual perception
GO:0042551 IEA neuron maturation
GO:0043565 IEA sequence-specific DNA binding
GO:0048666 IEA neuron development
GO:0050896 IEA response to stimulus
GO:0060040 IEA retinal bipolar neuron differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056292 vsx1 visual system homeobox 1 homolog, chx10-like protein_coding Danio_rerio
ENSMUSG00000033080 Vsx1 visual system homeobox 1 homolog (zebrafish) protein_coding Mus_musculus

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