C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane and coiled-coil domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143183 TMCO1 9606 - 1:165724293-165827755 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000367881 TMCO1-001 165726795-165769180 protein_coding
  ENST00000392129 TMCO1-008 165726795-165768902 protein_coding
  ENST00000464650 TMCO1-005 165727538-165768876 protein_coding
  ENST00000465705 TMCO1-002 165743179-165768918 nonsense_mediated_decay
  ENST00000476143 TMCO1-007 165728086-165768888 nonsense_mediated_decay
  ENST00000481278 TMCO1-003 165743169-165768837 protein_coding
  ENST00000580248 TMCO1-006 165727306-165827755 protein_coding
  ENST00000612311 TMCO1-201 165724293-165768922 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000392129ENST00000464650ENST00000465705ENST00000476143ENST00000580248ENST00000612311
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000392129 6.502±0.00 7.968±0.00 3.502±0.00 7.393±2.99 7.215±0.13 8.582±3.80 3.685±0.22 15.187±3.26 10.410±1.71 6.905±1.57 2.557±0.36 21.105±10.59 17.545±5.36 12.051±3.45
ENST00000464650 24.732±0.00 18.553±0.00 3.643±0.00 7.890±1.87 14.552±9.63 19.338±0.00 6.053±3.74 35.633±0.00 30.579±0.00 11.111±4.39 5.491±0.00 36.883±20.06 26.653±5.34 31.942±0.58
ENST00000465705 N/A N/A 6.481±0.00 N/A 7.444±0.00 11.847±0.00 N/A 17.142±0.00 8.784±0.00 N/A N/A 81.339±0.00 29.557±0.00 47.839±0.00
ENST00000476143 N/A N/A 7.939±0.00 N/A 11.377±0.00 22.241±0.00 7.859±2.95 29.780±0.00 N/A 11.314±0.00 10.053±0.00 43.526±0.00 N/A N/A
ENST00000580248 N/A N/A N/A 5.036±0.00 5.831±0.00 6.076±0.00 N/A 11.878±0.00 11.420±0.00 N/A 2.735±0.00 N/A N/A 12.258±2.65
ENST00000612311 N/A N/A N/A 1.598±0.00 N/A N/A N/A N/A N/A 1.303±0.00 N/A 1.465±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00027Y CIL_00027Y_0002 CGP 1:165662216-165827755
CIL_00027V CIL_00027V_0002 CGP 1:165724293-165911618

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069099 tmco1 transmembrane and coiled-coil domains 1 protein_coding Danio_rerio
ENSMUSG00000052428 Tmco1 transmembrane and coiled-coil domains 1 protein_coding Mus_musculus

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