C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: UPF3 regulator of nonsense transcripts homolog A (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000069297 upf3a 7955 - 9:35874275-35886698 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000100728 upf3a-201 35874570-35886698 protein_coding
  ENSDART00000123005 upf3a-202 35874570-35886655 protein_coding
  ENSDART00000129936 upf3a-002 35880239-35886692 retained_intron
  ENSDART00000139608 upf3a-001 35874275-35886698 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000100728ENSDART00000129936ENSDART00000139608
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000100728 86.659±0.00 N/A 0.130±0.00 0.027±0.00 1.217±0.00
ENSDART00000129936 N/A 0.547±0.42 0.432±0.10 N/A N/A
ENSDART00000139608 34.247±21.89 0.357±0.10 N/A N/A 0.402±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006810 IEA transport
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000169062 UPF3A UPF3 regulator of nonsense transcripts homolog A (yeast) protein_coding Homo_sapiens
ENSMUSG00000038398 Upf3a UPF3 regulator of nonsense transcripts homolog A (yeast) protein_coding Mus_musculus

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