C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: UPF3 regulator of nonsense transcripts homolog A (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000169062 UPF3A 9606 + 13:114281584-114305817 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000351487 UPF3A-010 114281628-114305808 protein_coding
  ENST00000375299 UPF3A-001 114281584-114305817 protein_coding
  ENST00000474056 UPF3A-007 114281925-114301792 processed_transcript
  ENST00000475218 UPF3A-002 114286385-114305808 processed_transcript
  ENST00000479712 UPF3A-009 114286374-114291744 processed_transcript
  ENST00000480362 UPF3A-003 114281720-114304949 processed_transcript
  ENST00000481131 UPF3A-008 114285975-114291718 processed_transcript
  ENST00000484246 UPF3A-005 114281645-114291757 processed_transcript
  ENST00000492270 UPF3A-006 114281603-114282270 protein_coding
  ENST00000493727 UPF3A-004 114281953-114301756 processed_transcript
  ENST00000618700 UPF3A-011 114281637-114283729 retained_intron
  ENST00000619079 UPF3A-012 114285077-114287617 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000351487ENST00000375299ENST00000475218ENST00000479712ENST00000480362ENST00000481131ENST00000493727ENST00000618700ENST00000619079
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000351487 2.927±0.00 N/A N/A N/A 1.432±1.13 1.210±0.00 N/A 1.648±0.00 0.750±0.37 1.108±0.00 N/A 8.332±6.23 4.111±1.20 19.548±9.94
ENST00000375299 2.650±0.00 3.796±0.00 0.471±0.00 3.829±2.86 1.746±1.41 1.068±0.00 0.503±0.38 0.314±0.00 0.716±0.19 0.685±0.00 N/A 3.380±1.35 2.920±0.48 11.905±2.58
ENST00000475218 3.922±0.00 6.834±0.00 N/A 6.129±0.00 4.503±0.00 2.021±0.00 N/A 3.331±0.00 0.294±0.00 3.087±0.00 N/A 5.936±0.00 N/A 8.895±0.00
ENST00000479712 N/A N/A N/A N/A N/A 6.882±0.00 N/A N/A 3.362±0.00 7.867±0.00 N/A N/A N/A N/A
ENST00000480362 N/A N/A 0.487±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 6.447±0.00 3.215±0.00 N/A
ENST00000481131 N/A N/A N/A N/A 2.448±0.00 N/A 0.970±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000493727 N/A N/A 0.465±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.149±0.00 N/A N/A
ENST00000618700 N/A N/A N/A N/A N/A N/A N/A N/A 1.244±0.00 N/A N/A N/A N/A N/A
ENST00000619079 N/A 3.228±0.00 1.046±0.00 1.695±0.47 1.213±0.22 1.243±0.00 0.299±0.07 1.013±0.00 0.553±0.00 N/A 0.298±0.00 1.878±0.85 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001ED CIL_0001ED_0001 CGP 13:114234887-114305817

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000184 NAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 IEA RNA binding
GO:0005487 NAS nucleocytoplasmic transporter activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005886 IDA plasma membrane
GO:0006913 NAS nucleocytoplasmic transport
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0035145 TAS exon-exon junction complex
GO:0045727 IDA positive regulation of translation
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069297 upf3a UPF3 regulator of nonsense transcripts homolog A (yeast) protein_coding Danio_rerio
ENSMUSG00000038398 Upf3a UPF3 regulator of nonsense transcripts homolog A (yeast) protein_coding Mus_musculus

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