C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: UPF3 regulator of nonsense transcripts homolog A (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038398 Upf3a 10090 + 8:13785615-13798538 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000043767 Upf3a-201 13785615-13798538 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043767
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043767 6.031±1.10 3.310±0.29 9.327±2.03 16.223±7.35 4.111±1.83 2.808±1.55 2.085±0.87 4.094±1.54 5.634±3.86 5.774±0.59 4.392±1.31 9.969±9.85 14.276±4.40 160.503±166.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001ED CIL_0001ED_0002 CGP 8:13757676-13798538
CIL_0007VU CIL_0007VU_0002 VISTA 8:13771980-14374029

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0045727 IEA positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069297 upf3a UPF3 regulator of nonsense transcripts homolog A (yeast) protein_coding Danio_rerio
ENSG00000169062 UPF3A UPF3 regulator of nonsense transcripts homolog A (yeast) protein_coding Homo_sapiens

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