C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000074381 farp1 7955 + 1:2058744-2200996 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000108619 farp1-201 2078170-2200558 protein_coding
  ENSDART00000108919 farp1-002 2058747-2151759 protein_coding
  ENSDART00000141036 farp1-005 2058758-2198469 processed_transcript
  ENSDART00000142944 farp1-004 2058760-2200996 protein_coding
  ENSDART00000143361 farp1-001 2058760-2165912 protein_coding
  ENSDART00000143758 farp1-003 2058744-2059409 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLiverMuscleENSDART00000108619ENSDART00000141036ENSDART00000142944
Transcript ID Heart Liver Muscle
ENSDART00000108619 2.848±1.60 0.150±0.00 N/A
ENSDART00000141036 N/A 0.528±0.00 N/A
ENSDART00000142944 1.927±0.00 N/A 0.622±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004FZ CIL_0004FZ_0001 CGP 1:2017193-2200996

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008092 IEA cytoskeletal protein binding
GO:0019898 IEA extrinsic to membrane
GO:0035023 IEA regulation of Rho protein signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000152767 FARP1 FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) protein_coding Homo_sapiens
ENSMUSG00000025555 Farp1 FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived) protein_coding Mus_musculus

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