C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025555 Farp1 10090 + 14:121035200-121283744 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026635 Farp1-001 121035564-121283744 protein_coding
  ENSMUST00000135010 Farp1-002 121035200-121235089 protein_coding
  ENSMUST00000137971 Farp1-004 121254908-121267921 retained_intron
  ENSMUST00000153607 Farp1-003 121102079-121238659 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026635ENSMUST00000135010ENSMUST00000153607
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026635 6.891±1.23 0.617±0.02 19.688±5.07 11.387±4.11 3.299±1.98 3.690±0.90 1.653±0.00 7.674±2.75 2.571±1.46 11.610±2.29 0.640±0.19 5.554±2.91 5.539±2.85 0.149±0.10
ENSMUST00000135010 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.342±0.00 N/A
ENSMUST00000153607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.105±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004FZ CIL_0004FZ_0003 CGP 14:120911194-121283744

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005829 ISS cytosol
GO:0005856 IEA cytoskeleton
GO:0007416 ISS synapse assembly
GO:0008092 IEA cytoskeletal protein binding
GO:0030054 IEA cell junction
GO:0030425 ISS dendrite
GO:0030676 ISS Rac guanyl-nucleotide exchange factor activity
GO:0031234 ISS extrinsic component of cytoplasmic side of plasma membrane
GO:0032855 ISS positive regulation of Rac GTPase activity
GO:0045202 IEA synapse
GO:0048365 IEA Rac GTPase binding
GO:0048813 ISS dendrite morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063695 FARP1 (1 of 2) FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) protein_coding Danio_rerio
ENSDARG00000074381 farp1 FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) protein_coding Danio_rerio
ENSG00000152767 FARP1 FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) protein_coding Homo_sapiens

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