C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA 2',3'-cyclic phosphate and 5'-OH ligase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000075434 rtcb 7955 - 4:383218-391983 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000111348 rtcb-001 383218-391983 protein_coding
  ENSDART00000136803 rtcb-002 389592-391950 processed_transcript
  ENSDART00000150031 rtcb-003 389501-391970 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000111348
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000111348 8.840±2.24 9.889±2.01 2.694±0.00 3.096±0.00 9.294±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003972 IEA RNA ligase (ATP) activity
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0006388 IEA tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006396 IEA RNA processing
GO:0008033 IEA tRNA processing
GO:0008452 IEA RNA ligase activity
GO:0016874 IEA ligase activity
GO:0046872 IEA metal ion binding
GO:0072669 IEA tRNA-splicing ligase complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000100220 RTCB RNA 2',3'-cyclic phosphate and 5'-OH ligase protein_coding Homo_sapiens
ENSMUSG00000001783 Rtcb RNA 2',3'-cyclic phosphate and 5'-OH ligase protein_coding Mus_musculus

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