C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA 2',3'-cyclic phosphate and 5'-OH ligase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100220 RTCB 9606 - 22:32387582-32412255 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000216038 RTCB-001 32387582-32412255 protein_coding
  ENST00000463455 RTCB-003 32407879-32412248 retained_intron
  ENST00000476619 RTCB-006 32398042-32407526 processed_transcript
  ENST00000485373 RTCB-007 32398048-32407409 processed_transcript
  ENST00000487704 RTCB-004 32401562-32412241 retained_intron
  ENST00000498434 RTCB-008 32397948-32399985 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000216038ENST00000485373ENST00000498434
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000216038 22.687±0.00 18.755±0.00 3.977±0.00 19.945±7.46 19.393±0.00 13.802±6.16 7.860±4.70 20.531±11.91 18.556±8.74 9.026±2.49 10.467±6.39 27.318±7.56 39.735±7.74 22.476±1.63
ENST00000485373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.798±0.00 N/A N/A N/A
ENST00000498434 N/A N/A N/A N/A 5.862±0.00 6.687±0.00 2.311±0.00 N/A N/A 7.040±0.00 3.221±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002NK CIL_0002NK_0001 CGP 22:32387582-32464484

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001701 IEA in utero embryonic development
GO:0001890 IEA placenta development
GO:0003972 IDA RNA ligase (ATP) activity
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006388 IDA tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006396 IEA RNA processing
GO:0008452 IEA RNA ligase activity
GO:0017166 IPI vinculin binding
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0072669 IDA tRNA-splicing ligase complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075434 rtcb RNA 2',3'-cyclic phosphate and 5'-OH ligase protein_coding Danio_rerio
ENSMUSG00000001783 Rtcb RNA 2',3'-cyclic phosphate and 5'-OH ligase protein_coding Mus_musculus

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