C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA 2',3'-cyclic phosphate and 5'-OH ligase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001783 Rtcb 10090 - 10:85938637-85957823 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001834 Rtcb-001 85938637-85957823 protein_coding
  ENSMUST00000139413 Rtcb-002 85948860-85955779 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001834
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001834 43.680±9.39 20.566±1.72 49.802±0.84 46.903±17.12 31.567±4.58 29.503±5.57 23.897±1.66 42.683±3.13 37.811±16.93 33.203±9.83 18.682±0.76 50.363±18.78 59.438±15.37 15.233±2.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001MC CIL_0001MC_0002 CGP 10:85891970-85946206
CIL_0002NK CIL_0002NK_0002 CGP 10:85938637-86011895

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0001890 IMP placenta development
GO:0003972 ISS RNA ligase (ATP) activity
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0006388 ISS tRNA splicing, via endonucleolytic cleavage and ligation
GO:0017166 IEA vinculin binding
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0072669 ISS tRNA-splicing ligase complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075434 rtcb RNA 2',3'-cyclic phosphate and 5'-OH ligase protein_coding Danio_rerio
ENSG00000100220 RTCB RNA 2',3'-cyclic phosphate and 5'-OH ligase protein_coding Homo_sapiens

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