C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: NK3 homeobox 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000078280 nkx3-1 7955 + 8:52535762-52538280 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000109908 nkx3-1-201 52535849-52538151 protein_coding
  ENSDART00000111138 nkx3-1-202 52535849-52538151 protein_coding
  ENSDART00000112136 nkx3-1-203 52535849-52538151 protein_coding
  ENSDART00000139251 nkx3-1-002 52535856-52537188 retained_intron
  ENSDART00000146056 nkx3-1-001 52535762-52538280 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000111138ENSDART00000112136ENSDART00000139251ENSDART00000146056
Transcript ID Brain Heart Kidney Muscle
ENSDART00000111138 0.025±0.00 N/A N/A N/A
ENSDART00000112136 0.112±0.00 N/A N/A N/A
ENSDART00000139251 0.147±0.00 0.274±0.14 0.160±0.00 N/A
ENSDART00000146056 0.095±0.00 N/A 0.116±0.00 0.471±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005R4 CIL_0005R4_0001 CGP 8:52507261-52538280
CIL_000460 CIL_000460_0001 CGP 8:52535762-52604468

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000167034 NKX3-1 NK3 homeobox 1 protein_coding Homo_sapiens
ENSMUSG00000022061 Nkx3-1 NK-3 transcription factor, locus 1 (Drosophila) protein_coding Mus_musculus

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