C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000087402 TPM1 7955 - 25:33891094-33948552 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000014851 TPM1-203 33891838-33948478 protein_coding
  ENSDART00000121680 TPM1-202 33891097-33948552 protein_coding
  ENSDART00000125892 TPM1-204 33898767-33948547 protein_coding
  ENSDART00000131098 TPM1-201 33891094-33939119 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLiverMuscleENSDART00000121680ENSDART00000125892ENSDART00000131098
Transcript ID Heart Kidney Liver Muscle
ENSDART00000121680 30.369±11.25 40.126±23.47 0.105±0.00 N/A
ENSDART00000125892 12.495±0.00 123.609±0.00 N/A 381.197±0.00
ENSDART00000131098 N/A 22.435±0.00 0.556±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OW CIL_0004OW_0001 CGP 25:33875040-33948552
CIL_0005H2 CIL_0005H2_0001 CGP 25:33891094-34104360

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000032366 Tpm1 tropomyosin 1, alpha protein_coding Mus_musculus

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