C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: caudal type homeo box transcription factor 1 a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000087811 cdx1a 7955 - 14:3399769-3403841 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000130960 cdx1a-201 3399769-3403841 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyMuscleENSDART00000130960
Transcript ID Heart Kidney Muscle
ENSDART00000130960 1.267±0.00 13.017±0.00 0.248±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079E CIL_00079E_0001 CGP 14:3399769-3495433

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000976 IEA transcription regulatory region sequence-specific DNA binding
GO:0001756 IGI somitogenesis
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007275 IEA multicellular organismal development
GO:0009948 IGI anterior/posterior axis specification
GO:0009952 IGI anterior/posterior pattern specification
GO:0021903 IGI rostrocaudal neural tube patterning
GO:0021906 IMP hindbrain-spinal cord boundary formation
GO:0030097 IGI hemopoiesis
GO:0031016 IGI pancreas development
GO:0043565 IEA sequence-specific DNA binding
GO:0048384 IGI retinoic acid receptor signaling pathway
GO:0048793 IGI pronephros development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000113722 CDX1 caudal type homeobox 1 protein_coding Homo_sapiens
ENSMUSG00000024619 Cdx1 caudal type homeobox 1 protein_coding Mus_musculus

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