C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: caudal type homeobox 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000113722 CDX1 9606 + 5:150166795-150184558 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000231656 CDX1-001 150166795-150184558 protein_coding
  ENST00000616154 CDX1-201 150166890-150184558 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000231656ENST00000616154
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000231656 N/A N/A N/A 0.615±0.00 4.472±2.17 N/A N/A N/A 1.923±0.00 N/A 0.220±0.00
ENST00000616154 0.156±0.00 0.963±0.00 0.155±0.00 3.403±0.00 15.803±2.78 0.016±0.00 0.035±0.00 0.020±0.00 15.272±19.65 0.132±0.08 1.649±0.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091Q CIL_00091Q_0001 VISTA 5:150006686-150608670

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001205 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0007389 IEA pattern specification process
GO:0009887 TAS organ morphogenesis
GO:0009952 IEA anterior/posterior pattern specification
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060349 IEA bone morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058999 cdx1b caudal type homeobox 1 b protein_coding Danio_rerio
ENSDARG00000087811 cdx1a caudal type homeo box transcription factor 1 a protein_coding Danio_rerio
ENSMUSG00000024619 Cdx1 caudal type homeobox 1 protein_coding Mus_musculus

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