C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: caudal type homeobox 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024619 Cdx1 10090 - 18:61018862-61036199 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025521 Cdx1-001 61018862-61036199 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartLiverLungOvaryPlacentaTestisENSMUST00000025521
Transcript ID Adipose Adrenal Brain Colon Heart Liver Lung Ovary Placenta Testis
ENSMUST00000025521 0.016±0.00 0.016±0.00 0.023±0.01 271.649±29.11 0.027±0.01 0.050±0.06 0.528±0.52 0.057±0.03 1.482±0.99 0.031±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091Q CIL_00091Q_0002 VISTA 18:60604549-61207221
CIL_00079E CIL_00079E_0002 CGP 18:61018862-61085061

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001205 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0007389 IMP pattern specification process
GO:0009952 IGI anterior/posterior pattern specification
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060349 IGI bone morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058999 cdx1b caudal type homeobox 1 b protein_coding Danio_rerio
ENSDARG00000087811 cdx1a caudal type homeo box transcription factor 1 a protein_coding Danio_rerio
ENSG00000113722 CDX1 caudal type homeobox 1 protein_coding Homo_sapiens

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