C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000003756 RBM5 9606 + 3:50088908-50119021 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000347869 RBM5-001 50088908-50119021 protein_coding
  ENST00000395174 RBM5-014 50093718-50108305 nonsense_mediated_decay
  ENST00000404526 RBM5-012 50088919-50103107 protein_coding
  ENST00000417905 RBM5-009 50090370-50100004 protein_coding
  ENST00000433556 RBM5-013 50088954-50100172 retained_intron
  ENST00000437500 RBM5-008 50089881-50093851 protein_coding
  ENST00000438369 RBM5-011 50088955-50100010 nonsense_mediated_decay
  ENST00000441305 RBM5-007 50088954-50100054 protein_coding
  ENST00000441812 RBM5-029 50107029-50113489 processed_transcript
  ENST00000461242 RBM5-027 50116545-50117175 retained_intron
  ENST00000462025 RBM5-015 50102726-50105614 retained_intron
  ENST00000464087 RBM5-004 50088963-50118957 retained_intron
  ENST00000464988 RBM5-025 50115352-50118570 retained_intron
  ENST00000469838 RBM5-003 50088919-50102194 protein_coding
  ENST00000471995 RBM5-016 50104577-50106801 retained_intron
  ENST00000474470 RBM5-020 50112064-50113492 processed_transcript
  ENST00000474818 RBM5-018 50104974-50110757 retained_intron
  ENST00000475128 RBM5-021 50112614-50115943 retained_intron
  ENST00000475590 RBM5-026 50114029-50117379 retained_intron
  ENST00000479275 RBM5-024 50114251-50116231 retained_intron
  ENST00000489437 RBM5-019 50107481-50110892 retained_intron
  ENST00000492430 RBM5-023 50114047-50116180 retained_intron
  ENST00000492472 RBM5-010 50088975-50094330 retained_intron
  ENST00000493993 RBM5-022 50113362-50114242 retained_intron
  ENST00000494360 RBM5-017 50106740-50109823 retained_intron
  ENST00000496179 RBM5-005 50102337-50108255 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000347869ENST00000417905ENST00000469838
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000347869 10.210±0.00 29.064±0.00 6.193±0.00 18.404±0.92 19.391±5.84 12.967±0.41 5.856±1.07 15.907±6.40 8.823±3.71 14.948±1.87 7.571±0.41 28.867±12.85 18.327±3.96 25.829±5.49
ENST00000417905 N/A N/A 62.779±0.00 N/A N/A 86.731±0.00 27.032±0.00 45.093±0.00 80.614±0.00 N/A N/A N/A 71.280±0.00 158.619±0.00
ENST00000469838 N/A N/A N/A N/A 14.779±0.00 12.751±0.00 4.755±0.00 N/A 12.445±0.00 18.432±0.00 N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000245 IDA spliceosomal complex assembly
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003677 TAS DNA binding
GO:0003723 TAS RNA binding
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 TAS spliceosomal complex
GO:0006396 TAS RNA processing
GO:0006915 IEA apoptotic process
GO:0008270 IEA zinc ion binding
GO:0008285 TAS negative regulation of cell proliferation
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0043065 IDA positive regulation of apoptotic process
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078781 rbm5 RNA binding motif protein 5 protein_coding Danio_rerio
ENSMUSG00000032580 Rbm5 RNA binding motif protein 5 protein_coding Mus_musculus

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