C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000347869 RBM5-001 ENSG00000003756 9606 + 3:50088908-50119021 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000347869
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000347869 10.210±0.00 29.064±0.00 6.193±0.00 18.404±0.92 19.391±5.84 12.967±0.41 5.856±1.07 15.907±6.40 8.823±3.71 14.948±1.87 7.571±0.41 28.867±12.85 18.327±3.96 25.829±5.49

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000245 IDA spliceosomal complex assembly
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003677 TAS DNA binding
GO:0003723 TAS RNA binding
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 TAS spliceosomal complex
GO:0006396 TAS RNA processing
GO:0006915 IEA apoptotic process
GO:0008270 IEA zinc ion binding
GO:0008285 TAS negative regulation of cell proliferation
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0043065 IDA positive regulation of apoptotic process
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000182659 Rbm5-001 protein_coding Mus_musculus 0 3873
ENSMUST00000035199 Rbm5-004 protein_coding Mus_musculus 0 3819
ENSMUST00000183307 Rbm5-006 retained_intron Mus_musculus 0 3005
ENSMUST00000182371 Rbm5-002 nonsense_mediated_decay Mus_musculus 0 3003
ENSMUST00000182421 Rbm5-003 nonsense_mediated_decay Mus_musculus 0 2287
ENSMUST00000182304 Rbm5-011 protein_coding Mus_musculus 0 1225
ENSMUST00000182007 Rbm5-008 retained_intron Mus_musculus 0 817
ENSMUST00000182332 Rbm5-016 retained_intron Mus_musculus 0 756
ENSMUST00000182422 Rbm5-013 retained_intron Mus_musculus 0 680
ENSMUST00000182022 Rbm5-012 protein_coding Mus_musculus 0 647
ENSMUST00000182073 Rbm5-009 retained_intron Mus_musculus 0 590
ENSMUST00000182026 Rbm5-018 protein_coding Mus_musculus 0 571
ENSMUST00000183248 Rbm5-010 protein_coding Mus_musculus 0 538
ENSMUST00000182856 Rbm5-014 retained_intron Mus_musculus 0 459
ENSMUST00000182518 Rbm5-005 retained_intron Mus_musculus 0 372
ENSDART00000155483 rbm5-002 protein_coding Danio_rerio 0 202
ENSDART00000114198 rbm5-201 protein_coding Danio_rerio 2e-19 102
ENSDART00000156839 rbm5-001 retained_intron Danio_rerio 2e-19 102
ENSMUST00000182836 Rbm5-015 retained_intron Mus_musculus 4e-16 92
ENSMUST00000182792 Rbm5-020 retained_intron Mus_musculus 0.0000000002 73

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