C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032580 Rbm5 10090 - 9:107740371-107770996 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000035199 Rbm5-004 107740500-107770987 protein_coding
  ENSMUST00000181993 Rbm5-019 107769185-107770959 retained_intron
  ENSMUST00000182007 Rbm5-008 107758444-107770959 retained_intron
  ENSMUST00000182022 Rbm5-012 107760319-107770959 protein_coding
  ENSMUST00000182026 Rbm5-018 107741964-107744286 protein_coding
  ENSMUST00000182073 Rbm5-009 107765091-107770989 retained_intron
  ENSMUST00000182215 Rbm5-017 107743333-107744234 retained_intron
  ENSMUST00000182304 Rbm5-011 107754123-107770495 protein_coding
  ENSMUST00000182332 Rbm5-016 107744269-107750022 retained_intron
  ENSMUST00000182371 Rbm5-002 107740500-107770980 nonsense_mediated_decay
  ENSMUST00000182421 Rbm5-003 107746044-107770951 nonsense_mediated_decay
  ENSMUST00000182422 Rbm5-013 107751881-107754602 retained_intron
  ENSMUST00000182518 Rbm5-005 107766605-107770986 retained_intron
  ENSMUST00000182659 Rbm5-001 107740371-107770996 protein_coding
  ENSMUST00000182792 Rbm5-020 107745194-107749911 retained_intron
  ENSMUST00000182836 Rbm5-015 107750293-107751962 retained_intron
  ENSMUST00000182856 Rbm5-014 107750500-107754090 retained_intron
  ENSMUST00000183248 Rbm5-010 107765487-107770945 protein_coding
  ENSMUST00000183307 Rbm5-006 107740495-107770981 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035199ENSMUST00000182371ENSMUST00000182421ENSMUST00000182659ENSMUST00000183248ENSMUST00000183307
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035199 N/A N/A 6.238±0.00 N/A N/A N/A N/A 2.161±0.00 3.305±0.37 N/A 3.173±0.08 N/A N/A N/A
ENSMUST00000182371 5.969±0.00 N/A 14.552±0.91 21.268±2.57 15.568±1.37 4.059±0.36 6.499±0.78 6.466±2.19 5.086±2.39 7.495±0.15 4.381±1.48 14.288±9.21 12.003±6.79 8.346±1.90
ENSMUST00000182421 19.645±3.46 36.472±4.88 N/A N/A 34.810±11.55 20.389±2.75 9.054±0.98 9.130±2.05 6.741±1.19 21.512±2.82 N/A 40.567±7.80 N/A 11.082±0.93
ENSMUST00000182659 N/A N/A 7.929±2.28 12.864±0.00 N/A N/A N/A N/A 7.207±1.91 N/A 3.375±1.18 19.092±0.00 11.152±1.98 N/A
ENSMUST00000183248 N/A N/A N/A 105.587±0.00 N/A N/A N/A N/A N/A N/A N/A 210.215±0.00 114.455±29.38 125.420±0.00
ENSMUST00000183307 9.282±3.33 6.936±1.79 8.697±0.25 13.581±5.75 9.279±0.71 4.199±1.01 4.005±0.31 3.185±0.52 3.073±0.95 8.793±0.49 3.196±0.39 10.853±3.17 4.475±1.03 5.399±1.40

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000245 ISS spliceosomal complex assembly
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0003729 ISS mRNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005681 IEA spliceosomal complex
GO:0006915 IEA apoptotic process
GO:0008270 IEA zinc ion binding
GO:0043065 ISS positive regulation of apoptotic process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078781 rbm5 RNA binding motif protein 5 protein_coding Danio_rerio
ENSG00000003756 RBM5 RNA binding motif protein 5 protein_coding Homo_sapiens

Loading