C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox A11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000005073 HOXA11 9606 - 7:27181510-27185223 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000006015 HOXA11-001 27181515-27185216 protein_coding
  ENST00000517402 HOXA11-002 27181510-27185223 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000517402
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000517402 0.709±0.00 0.384±0.00 0.444±0.29 7.667±0.00 3.602±0.00 1.588±0.00 0.025±0.00 1.194±0.77 1.453±1.39 7.944±2.62 1.162±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438
CIL_000811 CIL_000811_0001 VISTA 7:26948649-27549872
CIL_00097P CIL_00097P_0001 VISTA 7:27075631-27678581
CIL_0003P7 CIL_0003P7_0001 CGP 7:27170591-27185223
CIL_0003P8 CIL_0003P8_0001 CGP 7:27181510-27200106

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 ISS skeletal system development
GO:0001656 IEA metanephros development
GO:0001658 ISS branching involved in ureteric bud morphogenesis
GO:0001759 IEA organ induction
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005667 ISS transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0007275 ISS multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0007338 IEA single fertilization
GO:0007501 ISS mesodermal cell fate specification
GO:0008584 IEA male gonad development
GO:0009653 TAS anatomical structure morphogenesis
GO:0009952 IEA anterior/posterior pattern specification
GO:0009953 ISS dorsal/ventral pattern formation
GO:0009954 IEA proximal/distal pattern formation
GO:0010468 IEA regulation of gene expression
GO:0010720 ISS positive regulation of cell development
GO:0030326 ISS embryonic limb morphogenesis
GO:0032330 IEA regulation of chondrocyte differentiation
GO:0032332 ISS positive regulation of chondrocyte differentiation
GO:0032993 ISS protein-DNA complex
GO:0035115 IEA embryonic forelimb morphogenesis
GO:0042733 IEA embryonic digit morphogenesis
GO:0043234 ISS protein complex
GO:0043565 IEA sequence-specific DNA binding
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0048589 ISS developmental growth
GO:0060065 IEA uterus development
GO:0060272 IEA embryonic skeletal joint morphogenesis
GO:0060351 ISS cartilage development involved in endochondral bone morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007009 hoxa11b homeo box A11b protein_coding Danio_rerio
ENSMUSG00000038210 Hoxa11 homeobox A11 protein_coding Mus_musculus

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