C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003P7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000253293-ENSG00000005073 CGP 9606 7:27170591-27185223
GeneTranscriptPositionBiotype
ENSG00000078399 (HOXA9)
homeobox A9 		ENST00000343483 (HOXA9-001) 27162435-27165530 protein_coding
ENST00000396345 (HOXA9-003) 27163521-27165526 protein_coding
ENST00000465941 (HOXA9-006) 27163664-27175180 processed_transcript
ENST00000487384 (HOXA9-004) 27163307-27170498 processed_transcript
ENST00000489695 (HOXA9-005) 27163682-27169737 processed_transcript
ENST00000497089 (HOXA9-002) 27162600-27169444 processed_transcript
ENSG00000240990 (HOXA11-AS)
HOXA11 antisense RNA 		ENST00000479766 (HOXA11-AS-005) 27187819-27189220 antisense
ENST00000520360 (HOXA11-AS-001) 27184518-27189167 antisense
ENST00000520395 (HOXA11-AS-004) 27185534-27187121 antisense
ENST00000522674 (HOXA11-AS-002) 27185408-27189293 antisense
ENST00000522863 (HOXA11-AS-003) 27184671-27189167 antisense
ENSG00000253293 (HOXA10)
homeobox A10 		ENST00000283921 (HOXA10-001) 27170591-27174306 protein_coding
ENST00000396344 (HOXA10-003) 27171220-27180261 protein_coding
ENST00000519593 (HOXA10-006) 27171777-27172889 processed_transcript
ENST00000521421 (HOXA10-005) 27171463-27172889 processed_transcript
ENST00000524368 (HOXA10-004) 27171378-27172963 processed_transcript
ENST00000613671 (HOXA10-201) 27170592-27174255 protein_coding
CIL_0003P7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000000938-ENSMUSG00000038210 CGP 10090 6:52231197-52245810
GeneTranscriptPositionBiotype
ENSMUSG00000000938 (Hoxa10)
homeobox A10 		ENSMUST00000121043 (Hoxa10-004) 52231922-52240854 protein_coding
ENSMUST00000125581 (Hoxa10-001) 52231197-52234939 protein_coding
ENSMUST00000126402 (Hoxa10-002) 52231199-52233324 processed_transcript
ENSMUST00000142611 (Hoxa10-003) 52232082-52240795 processed_transcript
ENSMUSG00000038210 (Hoxa11)
homeobox A11 		ENSMUST00000048026 (Hoxa11-001) 52242106-52245810 protein_coding
ENSMUST00000131495 (Hoxa11-002) 52242110-52245795 processed_transcript
ENSMUSG00000086427 (Hoxa11os)
homeobox A11, opposite strand 		ENSMUST00000134512 (Hoxa11os-001) 52245243-52249769 antisense
ENSMUST00000137729 (Hoxa11os-005) 52246221-52249380 retained_intron
ENSMUST00000141850 (Hoxa11os-002) 52245989-52249790 antisense
ENSMUST00000147174 (Hoxa11os-003) 52245969-52249795 antisense
ENSMUST00000154027 (Hoxa11os-004) 52248422-52249799 antisense
ENSMUST00000156515 (Hoxa11os-006) 52244393-52249791 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003P7_0001ENSG00000078399ENST00000343483ENST00000396345ENST00000465941ENST00000487384ENST00000489695ENST00000497089ENSG00000240990ENST00000479766ENST00000520360ENST00000520395ENST00000522674ENST00000522863ENSG00000253293ENST00000283921ENST00000396344ENST00000519593ENST00000521421ENST00000524368ENST00000613671CIL_0003P7_0002ENSMUSG00000000938ENSMUST00000121043ENSMUST00000125581ENSMUST00000126402ENSMUST00000142611ENSMUSG00000038210ENSMUST00000048026ENSMUST00000131495ENSMUSG00000086427ENSMUST00000134512ENSMUST00000137729ENSMUST00000141850ENSMUST00000147174ENSMUST00000154027ENSMUST00000156515
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003P7_0001ENSG00000078399ENST00000343483ENST00000396345ENST00000487384ENST00000489695ENST00000497089ENSG00000240990ENST00000479766ENST00000520360ENST00000520395ENST00000522674ENST00000522863ENSG00000253293ENST00000283921ENST00000396344ENST00000524368ENST00000613671CIL_0003P7_0002ENSMUSG00000000938ENSMUST00000121043ENSMUST00000125581ENSMUST00000126402ENSMUST00000142611ENSMUSG00000038210ENSMUST00000048026ENSMUST00000131495ENSMUSG00000086427ENSMUST00000134512ENSMUST00000137729ENSMUST00000141850ENSMUST00000147174ENSMUST00000154027ENSMUST00000156515
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000078399 ENST00000343483 N/A 3.169±0.00 0.717±0.00 N/A 2.712±0.00 3.199±1.78 N/A 10.255±0.00 0.764±0.00 N/A 2.744±1.69 N/A 1.517±0.00 0.602±0.47
ENST00000396345 N/A N/A N/A N/A N/A N/A N/A N/A 0.105±0.00 N/A N/A N/A N/A 0.851±0.00
ENST00000465941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487384 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.616±0.00 N/A N/A N/A N/A
ENST00000489695 N/A N/A N/A 0.058±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497089 N/A N/A 1.079±0.00 N/A 1.808±0.00 N/A 0.078±0.00 6.101±0.00 N/A 0.047±0.00 N/A N/A 2.480±0.00 N/A
ENSG00000240990 ENST00000479766 0.676±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520360 N/A N/A N/A N/A N/A N/A N/A N/A 0.812±0.00 N/A N/A N/A N/A 1.035±0.00
ENST00000520395 N/A N/A N/A N/A N/A N/A 0.123±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000522674 N/A 0.176±0.00 N/A N/A 0.183±0.00 13.782±0.00 N/A N/A 0.985±0.00 N/A 1.011±0.17 0.682±0.00 N/A N/A
ENST00000522863 0.358±0.00 N/A N/A N/A 0.090±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000253293 ENST00000283921 2.913±0.00 N/A 0.509±0.00 N/A 1.654±0.00 2.463±1.22 N/A N/A 1.472±0.00 N/A 3.086±1.01 N/A 1.758±0.78 N/A
ENST00000396344 N/A N/A 1.030±0.00 N/A 2.107±0.00 N/A N/A N/A 2.837±0.00 0.134±0.00 3.325±0.00 2.416±0.97 2.881±0.00 N/A
ENST00000519593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524368 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.124±0.00 9.179±0.00 N/A 3.116±0.12 N/A
ENST00000613671 7.341±0.00 4.857±0.00 N/A 0.007±0.00 10.391±0.00 12.047±0.00 0.015±0.00 4.003±0.00 2.439±0.00 N/A 6.037±3.64 1.969±1.47 1.915±0.08 1.362±1.15
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000938 ENSMUST00000121043 17.549±14.13 N/A 18.497±3.98 0.021±0.00 0.595±0.19 8.159±1.07 N/A 9.498±0.72 0.030±0.02 0.096±0.00 2.764±0.73 N/A 1.456±0.61 0.322±0.27
ENSMUST00000125581 18.042±17.06 0.104±0.02 14.089±1.20 0.082±0.00 1.794±1.02 6.713±2.29 N/A 4.628±1.16 0.027±0.03 0.050±0.00 1.784±0.43 5.162±2.54 0.922±0.56 0.346±0.05
ENSMUST00000126402 2.976±0.00 0.101±0.03 12.677±1.15 N/A 0.404±0.00 N/A N/A 4.007±0.00 0.023±0.01 N/A 3.117±0.48 0.493±0.30 1.692±1.38 0.064±0.04
ENSMUST00000142611 17.507±15.29 N/A N/A 0.031±0.00 1.181±0.00 10.777±1.74 N/A 6.783±0.00 0.071±0.05 0.125±0.00 N/A 0.142±0.00 N/A 0.263±0.00
ENSMUSG00000038210 ENSMUST00000048026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.710±0.00 N/A
ENSMUST00000131495 13.300±8.82 N/A 10.565±0.85 N/A N/A N/A N/A 0.840±0.14 0.014±0.01 N/A 2.411±0.23 0.514±0.20 1.351±0.70 0.063±0.03
ENSMUSG00000086427 ENSMUST00000134512 31.763±0.75 N/A 18.298±0.57 0.016±0.00 N/A N/A N/A 0.734±0.07 0.016±0.00 N/A 1.349±0.05 1.666±0.93 1.259±0.55 0.039±0.00
ENSMUST00000137729 2.017±0.00 N/A 28.541±4.86 0.069±0.04 N/A 67.636±5.90 N/A N/A 0.076±0.02 0.283±0.00 N/A 2.411±0.23 3.407±0.00 0.336±0.00
ENSMUST00000141850 N/A N/A 18.338±0.00 N/A N/A N/A N/A N/A 0.015±0.01 N/A 2.016±0.11 N/A 0.635±0.00 0.119±0.05
ENSMUST00000147174 N/A N/A N/A N/A N/A N/A N/A N/A 0.138±0.01 N/A 2.255±0.69 N/A N/A 0.257±0.00
ENSMUST00000154027 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.402±0.30 1.331±0.00 N/A
ENSMUST00000156515 N/A N/A 13.374±1.41 N/A N/A N/A N/A N/A 0.042±0.00 N/A N/A 0.988±0.34 N/A 0.013±0.00

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