C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003P8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000005073-ENSG00000106031 CGP 9606 7:27181510-27200106
GeneTranscriptPositionBiotype
ENSG00000106031 (HOXA13)
homeobox A13 		ENST00000222753 (HOXA13-001) 27195018-27200106 protein_coding
ENST00000518136 (HOXA13-002) 27193503-27195600 processed_transcript
ENSG00000240990 (HOXA11-AS)
HOXA11 antisense RNA 		ENST00000479766 (HOXA11-AS-005) 27187819-27189220 antisense
ENST00000520360 (HOXA11-AS-001) 27184518-27189167 antisense
ENST00000520395 (HOXA11-AS-004) 27185534-27187121 antisense
ENST00000522674 (HOXA11-AS-002) 27185408-27189293 antisense
ENST00000522863 (HOXA11-AS-003) 27184671-27189167 antisense
ENSG00000243766 (HOTTIP)
HOXA distal transcript antisense RNA 		ENST00000421733 (HOTTIP-002) 27198575-27201236 antisense
ENST00000472494 (HOTTIP-005) 27200437-27202822 antisense
ENST00000521028 (HOTTIP-001) 27201842-27207259 antisense
ENST00000605136 (HOTTIP-003) 27200437-27201823 antisense
ENST00000614457 (HOTTIP-006) 27200421-27201687 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0003P8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038210-ENSMUSG00000038203 CGP 10090 6:52242106-52260880
GeneTranscriptPositionBiotype
ENSMUSG00000038203 (Hoxa13)
homeobox A13 		ENSMUST00000047993 (Hoxa13-201) 52258853-52260880 protein_coding
ENSMUST00000114416 (Hoxa13-202) 52258871-52260802 protein_coding
ENSMUST00000147595 (Hoxa13-001) 52257694-52260803 protein_coding
ENSMUST00000172961 (Hoxa13-003) 52258871-52260802 processed_transcript
ENSMUST00000173368 (Hoxa13-002) 52258871-52260802 processed_transcript
ENSMUST00000174763 (Hoxa13-004) 52258871-52260802 processed_transcript
ENSMUSG00000038210 (Hoxa11)
homeobox A11 		ENSMUST00000048026 (Hoxa11-001) 52242106-52245810 protein_coding
ENSMUST00000131495 (Hoxa11-002) 52242110-52245795 processed_transcript
ENSMUSG00000086427 (Hoxa11os)
homeobox A11, opposite strand 		ENSMUST00000134512 (Hoxa11os-001) 52245243-52249769 antisense
ENSMUST00000137729 (Hoxa11os-005) 52246221-52249380 retained_intron
ENSMUST00000141850 (Hoxa11os-002) 52245989-52249790 antisense
ENSMUST00000147174 (Hoxa11os-003) 52245969-52249795 antisense
ENSMUST00000154027 (Hoxa11os-004) 52248422-52249799 antisense
ENSMUST00000156515 (Hoxa11os-006) 52244393-52249791 antisense
ENSMUSG00000098435 (Gm27492)
predicted gene, 27492 		ENSMUST00000185194 (Gm27492-201) 52246399-52246585 misc_RNA
ENSMUSG00000098683 (Gm27817)
predicted gene, 27817 		ENSMUST00000184302 (Gm27817-201) 52247421-52247653 misc_RNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003P8_0001ENSG00000106031ENST00000222753ENST00000518136ENSG00000240990ENST00000479766ENST00000520360ENST00000520395ENST00000522674ENST00000522863ENSG00000243766ENST00000421733ENST00000472494ENST00000521028ENST00000605136ENST00000614457CIL_0003P8_0002ENSMUSG00000038203ENSMUST00000047993ENSMUST00000114416ENSMUST00000147595ENSMUST00000172961ENSMUST00000173368ENSMUST00000174763ENSMUSG00000038210ENSMUST00000048026ENSMUST00000131495ENSMUSG00000086427ENSMUST00000134512ENSMUST00000137729ENSMUST00000141850ENSMUST00000147174ENSMUST00000154027ENSMUST00000156515ENSMUSG00000098435ENSMUST00000185194ENSMUSG00000098683ENSMUST00000184302
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003P8_0001ENSG00000106031ENST00000222753ENSG00000240990ENST00000479766ENST00000520360ENST00000520395ENST00000522674ENST00000522863ENSG00000243766ENST00000421733ENST00000472494ENST00000521028ENST00000614457CIL_0003P8_0002ENSMUSG00000038203ENSMUST00000047993ENSMUST00000114416ENSMUST00000147595ENSMUST00000172961ENSMUST00000173368ENSMUST00000174763ENSMUSG00000038210ENSMUST00000048026ENSMUST00000131495ENSMUSG00000086427ENSMUST00000134512ENSMUST00000137729ENSMUST00000141850ENSMUST00000147174ENSMUST00000154027ENSMUST00000156515ENSMUSG00000098435ENSMUST00000185194ENSMUSG00000098683ENSMUST00000184302
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106031 ENST00000222753 0.314±0.00 0.020±0.00 N/A N/A 0.090±0.02 3.315±1.21 N/A 0.025±0.00 5.112±0.00 N/A 0.153±0.14 0.216±0.11 3.491±1.81 0.090±0.06
ENST00000518136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000240990 ENST00000479766 0.676±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520360 N/A N/A N/A N/A N/A N/A N/A N/A 0.812±0.00 N/A N/A N/A N/A 1.035±0.00
ENST00000520395 N/A N/A N/A N/A N/A N/A 0.123±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000522674 N/A 0.176±0.00 N/A N/A 0.183±0.00 13.782±0.00 N/A N/A 0.985±0.00 N/A 1.011±0.17 0.682±0.00 N/A N/A
ENST00000522863 0.358±0.00 N/A N/A N/A 0.090±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000243766 ENST00000421733 N/A N/A N/A N/A 0.529±0.00 N/A 0.050±0.00 N/A N/A N/A N/A 0.408±0.00 N/A N/A
ENST00000472494 N/A N/A N/A N/A N/A 1.084±0.00 N/A N/A N/A N/A N/A 0.031±0.00 N/A N/A
ENST00000521028 N/A N/A N/A N/A 0.010±0.00 N/A N/A 0.005±0.00 N/A N/A 0.014±0.00 0.036±0.01 0.374±0.15 0.005±0.00
ENST00000605136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.257±0.00 N/A 0.016±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038203 ENSMUST00000047993 0.099±0.02 N/A N/A N/A N/A 9.946±1.50 N/A 0.024±0.00 0.030±0.00 0.028±0.00 1.234±0.00 0.045±0.00 N/A N/A
ENSMUST00000114416 0.179±0.00 N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A 0.085±0.00 N/A 0.050±0.00 7.425±2.54 0.147±0.00
ENSMUST00000147595 0.186±0.04 N/A 11.705±3.28 0.035±0.00 N/A 2.347±0.68 N/A 0.015±0.00 0.017±0.00 N/A 1.040±0.24 0.009±0.00 0.803±0.87 0.015±0.00
ENSMUST00000172961 0.316±0.05 N/A N/A N/A N/A N/A N/A 0.011±0.00 0.022±0.00 0.084±0.00 N/A N/A N/A 0.064±0.00
ENSMUST00000173368 0.207±0.01 N/A N/A N/A N/A 11.776±3.32 N/A 0.011±0.00 0.065±0.00 0.057±0.00 N/A N/A N/A N/A
ENSMUST00000174763 0.179±0.00 N/A N/A N/A N/A 9.159±2.53 N/A 0.010±0.00 N/A 0.085±0.00 N/A 0.050±0.00 7.425±2.54 0.147±0.00
ENSMUSG00000038210 ENSMUST00000048026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.710±0.00 N/A
ENSMUST00000131495 13.300±8.82 N/A 10.565±0.85 N/A N/A N/A N/A 0.840±0.14 0.014±0.01 N/A 2.411±0.23 0.514±0.20 1.351±0.70 0.063±0.03
ENSMUSG00000086427 ENSMUST00000134512 31.763±0.75 N/A 18.298±0.57 0.016±0.00 N/A N/A N/A 0.734±0.07 0.016±0.00 N/A 1.349±0.05 1.666±0.93 1.259±0.55 0.039±0.00
ENSMUST00000137729 2.017±0.00 N/A 28.541±4.86 0.069±0.04 N/A 67.636±5.90 N/A N/A 0.076±0.02 0.283±0.00 N/A 2.411±0.23 3.407±0.00 0.336±0.00
ENSMUST00000141850 N/A N/A 18.338±0.00 N/A N/A N/A N/A N/A 0.015±0.01 N/A 2.016±0.11 N/A 0.635±0.00 0.119±0.05
ENSMUST00000147174 N/A N/A N/A N/A N/A N/A N/A N/A 0.138±0.01 N/A 2.255±0.69 N/A N/A 0.257±0.00
ENSMUST00000154027 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.402±0.30 1.331±0.00 N/A
ENSMUST00000156515 N/A N/A 13.374±1.41 N/A N/A N/A N/A N/A 0.042±0.00 N/A N/A 0.988±0.34 N/A 0.013±0.00
ENSMUSG00000098435 ENSMUST00000185194 N/A N/A N/A N/A 7.882±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000098683 ENSMUST00000184302 2.915±1.68 N/A 8.613±0.95 0.197±0.00 N/A 4.533±2.21 N/A N/A N/A N/A 0.512±0.00 0.470±0.00 0.900±0.42 N/A

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