C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 41 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000006715 VPS41 9606 - 7:38722963-38932394 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265745 VPS41-010 38795542-38909191 nonsense_mediated_decay
  ENST00000310301 VPS41-001 38722963-38909229 protein_coding
  ENST00000395969 VPS41-002 38725555-38909174 protein_coding
  ENST00000413141 VPS41-012 38795492-38831346 protein_coding
  ENST00000414632 VPS41-003 38796745-38909191 protein_coding
  ENST00000418457 VPS41-014 38817803-38929560 protein_coding
  ENST00000439468 VPS41-006 38741284-38745562 protein_coding
  ENST00000448833 VPS41-004 38726236-38745581 nonsense_mediated_decay
  ENST00000457055 VPS41-013 38821218-38932394 protein_coding
  ENST00000462429 VPS41-008 38758402-38765753 retained_intron
  ENST00000466017 VPS41-011 38772599-38797041 processed_transcript
  ENST00000482217 VPS41-007 38726319-38745998 retained_intron
  ENST00000485955 VPS41-009 38774158-38775672 processed_transcript
  ENST00000490924 VPS41-005 38726109-38727186 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000310301ENST00000395969ENST00000414632ENST00000482217ENST00000490924
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000310301 2.675±0.00 2.504±0.00 6.417±1.69 3.798±0.35 2.984±0.45 1.236±0.61 2.053±1.19 2.617±0.00 N/A 0.214±0.16 2.019±0.60 2.255±0.66 3.370±0.53
ENST00000395969 4.571±0.00 3.537±0.00 10.427±0.12 3.894±1.15 3.533±0.00 2.327±1.37 4.130±3.12 3.389±0.54 3.037±0.21 0.524±0.36 3.883±1.16 5.015±2.29 4.756±1.40
ENST00000414632 N/A N/A 32.174±0.00 N/A 12.671±0.00 4.702±0.00 N/A 15.155±0.00 N/A 2.923±0.00 12.140±0.00 N/A N/A
ENST00000482217 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.362±0.00 N/A N/A N/A
ENST00000490924 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.792±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0005765 IDA lysosomal membrane
GO:0005769 IEA early endosome
GO:0005770 IEA late endosome
GO:0005798 IMP Golgi-associated vesicle
GO:0005829 IDA cytosol
GO:0006886 IEA intracellular protein transport
GO:0008017 IEA microtubule binding
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0015630 IEA microtubule cytoskeleton
GO:0016020 IDA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0030897 IDA HOPS complex
GO:0048193 IMP Golgi vesicle transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063573 vps41 vacuolar protein sorting 41 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000041236 Vps41 vacuolar protein sorting 41 (yeast) protein_coding Mus_musculus

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