C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 41 (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041236 Vps41 10090 + 13:18717292-18866809 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000072961 Vps41-201 18717292-18866809 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072961
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072961 15.088±2.39 9.933±2.89 19.852±2.16 33.128±9.79 10.297±2.17 6.960±2.00 6.470±1.28 12.059±3.02 7.496±1.83 9.671±1.34 12.105±0.49 16.636±6.21 17.409±1.71 4.956±1.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JU CIL_0007JU_0003 UCNEbase 13:18085487-18744399

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005765 IEA lysosomal membrane
GO:0005769 IDA early endosome
GO:0005770 IDA late endosome
GO:0005798 IEA Golgi-associated vesicle
GO:0005829 IEA cytosol
GO:0006886 IEA intracellular protein transport
GO:0008017 IDA microtubule binding
GO:0008270 IEA zinc ion binding
GO:0015630 IDA microtubule cytoskeleton
GO:0016020 IEA membrane
GO:0030897 IEA HOPS complex
GO:0048193 IEA Golgi vesicle transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063573 vps41 vacuolar protein sorting 41 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000006715 VPS41 vacuolar protein sorting 41 homolog (S. cerevisiae) protein_coding Homo_sapiens

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