C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SprT-like N-terminal domain
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000010072 SPRTN 9606 + 1:231337104-231355023 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000008440 SPRTN-003 231338256-231352521 protein_coding
  ENST00000295050 SPRTN-001 231338048-231355023 protein_coding
  ENST00000366644 SPRTN-004 231339427-231352764 protein_coding
  ENST00000391858 SPRTN-002 231337104-231353132 protein_coding
  ENST00000469904 SPRTN-006 231347677-231352754 processed_transcript
  ENST00000492437 SPRTN-005 231338295-231340061 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295050ENST00000391858ENST00000469904
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295050 1.240±0.00 2.094±0.00 1.157±0.00 1.093±0.41 1.369±0.04 0.856±0.20 1.184±0.53 1.689±0.00 1.083±0.38 0.436±0.00 1.647±0.00 1.745±0.57 1.599±0.05 4.583±0.20
ENST00000391858 N/A N/A 0.386±0.00 1.106±0.00 1.252±0.00 N/A 0.383±0.00 N/A 0.557±0.07 N/A 1.932±0.00 N/A 0.825±0.34 2.000±0.00
ENST00000469904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.593±0.00 N/A 12.902±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006B5 CIL_0006B5_0001 CGP 1:231241207-231337852
CIL_0006B4 CIL_0006B4_0001 CGP 1:231332753-231355023
CIL_0006AZ CIL_0006AZ_0001 CGP 1:231337104-231425044

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005694 IEA chromosome
GO:0006281 IEA DNA repair
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0009411 IDA response to UV
GO:0016607 IDA nuclear speck
GO:0019985 IDA translesion synthesis
GO:0031398 IDA positive regulation of protein ubiquitination
GO:0043130 IDA ubiquitin binding
GO:0046872 IEA metal ion binding
GO:0070530 IDA K63-linked polyubiquitin binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000031986 Sprtn SprT-like N-terminal domain protein_coding Mus_musculus

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