C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SprT-like N-terminal domain
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000295050 SPRTN-001 ENSG00000010072 9606 + 1:231338048-231355023 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295050
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295050 1.240±0.00 2.094±0.00 1.157±0.00 1.093±0.41 1.369±0.04 0.856±0.20 1.184±0.53 1.689±0.00 1.083±0.38 0.436±0.00 1.647±0.00 1.745±0.57 1.599±0.05 4.583±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006B5 CIL_0006B5_0001 CGP 1:231241207-231337852
CIL_0006B4 CIL_0006B4_0001 CGP 1:231332753-231355023
CIL_0006AZ CIL_0006AZ_0001 CGP 1:231337104-231425044

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005694 IEA chromosome
GO:0006281 IEA DNA repair
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0009411 IDA response to UV
GO:0016607 IDA nuclear speck
GO:0019985 IDA translesion synthesis
GO:0031398 IDA positive regulation of protein ubiquitination
GO:0043130 IDA ubiquitin binding
GO:0046872 IEA metal ion binding
GO:0070530 IDA K63-linked polyubiquitin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034467 Sprtn-201 protein_coding Mus_musculus 0 765

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