C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sex comb on midleg homolog 1 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000010803 SCMH1 9606 - 1:41027200-41242154 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000326197 SCMH1-005 41027202-41160898 protein_coding
  ENST00000337495 SCMH1-003 41027202-41242110 protein_coding
  ENST00000361191 SCMH1-201 41027200-41161481 protein_coding
  ENST00000361705 SCMH1-202 41027200-41161481 protein_coding
  ENST00000372595 SCMH1-004 41027202-41163017 protein_coding
  ENST00000372596 SCMH1-002 41027202-41242116 protein_coding
  ENST00000372597 SCMH1-001 41027202-41242116 protein_coding
  ENST00000397171 SCMH1-203 41027200-41161481 protein_coding
  ENST00000397174 SCMH1-204 41027200-41152674 protein_coding
  ENST00000402904 SCMH1-205 41027200-41161433 protein_coding
  ENST00000456518 SCMH1-012 41028192-41159871 protein_coding
  ENST00000460215 SCMH1-010 41028584-41045836 processed_transcript
  ENST00000472037 SCMH1-006 41027204-41037452 protein_coding
  ENST00000482530 SCMH1-009 41041422-41070631 processed_transcript
  ENST00000488592 SCMH1-011 41185984-41242154 retained_intron
  ENST00000489421 SCMH1-007 41037362-41048760 processed_transcript
  ENST00000498793 SCMH1-008 41028642-41046669 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000326197ENST00000337495ENST00000361191ENST00000361705ENST00000372595ENST00000372596ENST00000372597ENST00000397171ENST00000397174ENST00000402904ENST00000456518
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000326197 1.355±0.00 N/A 1.197±0.00 N/A N/A 3.060±0.00 N/A N/A 0.515±0.00 N/A N/A 3.877±1.35 1.575±0.83 7.864±4.37
ENST00000337495 3.149±0.00 3.367±0.00 1.078±0.00 2.269±0.00 3.436±0.00 5.717±0.00 3.896±3.31 3.446±0.00 0.538±0.00 0.455±0.00 8.117±0.00 4.974±2.84 2.089±0.00 4.832±0.00
ENST00000361191 1.659±0.00 N/A N/A N/A N/A 5.331±0.00 0.888±0.00 N/A 1.248±0.00 N/A 2.109±0.00 2.450±0.43 1.445±0.00 N/A
ENST00000361705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.324±0.00 N/A
ENST00000372595 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.305±0.00 N/A N/A N/A 2.734±0.00
ENST00000372596 N/A N/A N/A 0.615±0.00 1.641±0.00 N/A 0.418±0.00 N/A N/A 2.165±0.00 0.433±0.00 3.033±0.00 N/A N/A
ENST00000372597 N/A N/A N/A 0.582±0.00 1.632±0.00 N/A N/A N/A N/A N/A N/A N/A 0.648±0.00 N/A
ENST00000397171 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.434±0.00 N/A N/A N/A N/A
ENST00000397174 5.019±0.00 5.480±0.00 N/A 1.869±0.00 8.491±0.00 6.254±0.00 3.250±0.00 4.295±0.00 N/A 5.330±0.00 N/A 6.971±4.92 1.588±0.28 7.341±1.38
ENST00000402904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.029±0.00 8.912±0.00
ENST00000456518 N/A N/A N/A 3.976±0.00 N/A 1.517±0.00 1.228±0.00 0.821±0.00 4.132±0.00 1.078±0.00 3.112±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009C0 CIL_0009C0_0001 VISTA 1:40944924-41547265
CIL_000876 CIL_000876_0001 VISTA 1:40945428-41547337

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 TAS DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IC:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007283 IEA spermatogenesis
GO:0009653 TAS anatomical structure morphogenesis
GO:0009952 IEA anterior/posterior pattern specification
GO:0010369 IEA chromocenter
GO:0016458 ISS gene silencing
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IC negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069932 scmh1 sex comb on midleg homolog 1 (Drosophila) protein_coding Danio_rerio
ENSMUSG00000000085 Scmh1 sex comb on midleg homolog 1 protein_coding Mus_musculus

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