C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sex comb on midleg homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397174 SCMH1-204 ENSG00000010803 9606 - 1:41027200-41152674 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000397174
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000397174 5.019±0.00 5.480±0.00 1.869±0.00 8.491±0.00 6.254±0.00 3.250±0.00 4.295±0.00 5.330±0.00 6.971±4.92 1.588±0.28 7.341±1.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009C0 CIL_0009C0_0001 VISTA 1:40944924-41547265
CIL_000876 CIL_000876_0001 VISTA 1:40945428-41547337

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 TAS DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IC:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009653 TAS anatomical structure morphogenesis
GO:0016458 ISS gene silencing
GO:0045892 IC negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000087 Scmh1-001 protein_coding Mus_musculus 0 2645
ENSMUST00000106298 Scmh1-202 protein_coding Mus_musculus 0 2638
ENSMUST00000064991 Scmh1-201 protein_coding Mus_musculus 0 2617
ENSMUST00000106301 Scmh1-002 protein_coding Mus_musculus 0 2617
ENSMUST00000144555 Scmh1-006 processed_transcript Mus_musculus 0 1131
ENSMUST00000136801 Scmh1-003 processed_transcript Mus_musculus 0 601
ENSMUST00000144862 Scmh1-005 processed_transcript Mus_musculus 0 571
ENSMUST00000122860 Scmh1-010 protein_coding Mus_musculus 0 399
ENSMUST00000133290 Scmh1-011 processed_transcript Mus_musculus 0 320
ENSMUST00000132116 Scmh1-008 protein_coding Mus_musculus 5e-35 154
ENSMUST00000133169 Scmh1-012 processed_transcript Mus_musculus 9e-33 147
ENSMUST00000151345 Scmh1-009 processed_transcript Mus_musculus 4e-16 92

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