C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sex comb on midleg homolog 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000000085 Scmh1 10090 + 4:120405281-120530186 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000000087 Scmh1-001 120405307-120530184 protein_coding
  ENSMUST00000064991 Scmh1-201 120453243-120530162 protein_coding
  ENSMUST00000106298 Scmh1-202 120462080-120529259 protein_coding
  ENSMUST00000106301 Scmh1-002 120447147-120530184 protein_coding
  ENSMUST00000122860 Scmh1-010 120505405-120522556 protein_coding
  ENSMUST00000132116 Scmh1-008 120405428-120463084 protein_coding
  ENSMUST00000133169 Scmh1-012 120529155-120530186 processed_transcript
  ENSMUST00000133290 Scmh1-011 120527829-120529220 processed_transcript
  ENSMUST00000134375 Scmh1-004 120405281-120454515 processed_transcript
  ENSMUST00000136801 Scmh1-003 120517626-120530184 processed_transcript
  ENSMUST00000144555 Scmh1-006 120503879-120530184 processed_transcript
  ENSMUST00000144862 Scmh1-005 120517679-120529801 processed_transcript
  ENSMUST00000151345 Scmh1-009 120405366-120463119 processed_transcript
  ENSMUST00000153099 Scmh1-007 120405381-120448732 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000087ENSMUST00000064991ENSMUST00000106298ENSMUST00000106301ENSMUST00000136801
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000087 3.272±1.31 3.378±0.56 7.688±0.89 3.986±0.89 1.936±0.44 1.874±0.29 4.831±0.84 2.134±0.92 1.618±0.67 4.461±0.85 3.144±0.69 3.763±2.17 1.179±0.46 17.217±7.72
ENSMUST00000064991 N/A N/A N/A N/A N/A 1.925±0.25 N/A N/A 0.530±0.14 N/A 1.542±0.19 4.662±0.80 N/A N/A
ENSMUST00000106298 5.776±2.31 2.133±0.20 9.821±0.93 10.113±0.78 2.026±0.40 3.684±0.33 3.137±0.87 2.795±1.01 2.015±0.91 2.749±0.57 3.993±1.33 7.698±2.44 1.895±1.41 12.116±1.91
ENSMUST00000106301 1.143±0.00 N/A N/A N/A 1.808±0.78 N/A N/A 1.938±0.55 0.957±0.00 1.979±0.00 N/A N/A N/A 7.635±1.41
ENSMUST00000136801 7.535±3.82 2.091±0.00 20.004±1.16 6.090±2.59 3.058±0.48 7.558±1.95 4.372±0.26 4.604±0.92 1.841±1.04 4.970±1.17 3.832±0.89 9.325±2.79 1.212±0.86 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000876 CIL_000876_0002 VISTA 4:120091603-120693946
CIL_0009C0 CIL_0009C0_0002 VISTA 4:120091667-120696253

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA:IC nucleus
GO:0006338 IMP chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0007283 IGI spermatogenesis
GO:0009952 IMP anterior/posterior pattern specification
GO:0010369 IDA chromocenter
GO:0016458 ISS gene silencing
GO:0045892 IC negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069932 scmh1 sex comb on midleg homolog 1 (Drosophila) protein_coding Danio_rerio
ENSG00000010803 SCMH1 sex comb on midleg homolog 1 (Drosophila) protein_coding Homo_sapiens

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