C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chloride channel, voltage-sensitive 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000011021 CLCN6 9606 + 1:11806096-11843144 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000312413 CLCN6-201 11806096-11843143 protein_coding
  ENST00000346436 CLCN6-001 11806211-11843144 protein_coding
  ENST00000376490 CLCN6-002 11806263-11828218 processed_transcript
  ENST00000376491 CLCN6-004 11806263-11828218 processed_transcript
  ENST00000376492 CLCN6-003 11806263-11829303 processed_transcript
  ENST00000376496 CLCN6-005 11806260-11839050 protein_coding
  ENST00000376497 CLCN6-006 11806213-11820779 protein_coding
  ENST00000494028 CLCN6-007 11829849-11834308 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000312413ENST00000346436
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000312413 N/A N/A N/A 1.276±0.00 2.726±0.00 N/A N/A 3.887±0.00 N/A 2.403±0.00 N/A N/A N/A N/A
ENST00000346436 5.269±0.00 5.243±0.00 2.580±0.00 9.820±6.17 1.515±0.37 2.533±1.81 0.811±0.00 0.675±0.00 1.042±0.23 1.790±0.00 2.924±0.00 5.360±2.45 2.094±0.47 6.391±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087H CIL_00087H_0001 VISTA 1:11580820-12184055

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005247 NAS:IEA voltage-gated chloride channel activity
GO:0005524 IEA ATP binding
GO:0005765 IDA lysosomal membrane
GO:0006821 NAS:IEA chloride transport
GO:0006884 NAS cell volume homeostasis
GO:0007165 NAS signal transduction
GO:0009612 IEA response to mechanical stimulus
GO:0010008 TAS endosome membrane
GO:0015297 IEA antiporter activity
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0034220 TAS ion transmembrane transport
GO:0044070 IEA regulation of anion transport
GO:0055085 TAS:IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032577 clcn6 chloride channel 6 protein_coding Danio_rerio
ENSMUSG00000029016 Clcn6 chloride channel 6 protein_coding Mus_musculus

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