C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chloride channel, voltage-sensitive 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000346436 CLCN6-001 ENSG00000011021 9606 + 1:11806211-11843144 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000346436
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000346436 5.269±0.00 5.243±0.00 2.580±0.00 9.820±6.17 1.515±0.37 2.533±1.81 0.811±0.00 0.675±0.00 1.042±0.23 1.790±0.00 2.924±0.00 5.360±2.45 2.094±0.47 6.391±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087H CIL_00087H_0001 VISTA 1:11580820-12184055

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005247 NAS:IEA voltage-gated chloride channel activity
GO:0005524 IEA ATP binding
GO:0005765 IDA lysosomal membrane
GO:0006821 NAS:IEA chloride transport
GO:0006884 NAS cell volume homeostasis
GO:0007165 NAS signal transduction
GO:0009612 IEA response to mechanical stimulus
GO:0010008 TAS endosome membrane
GO:0015297 IEA antiporter activity
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0034220 TAS ion transmembrane transport
GO:0044070 IEA regulation of anion transport
GO:0055085 TAS:IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030879 Clcn6-201 protein_coding Mus_musculus 0 3434
ENSMUST00000137724 Clcn6-001 protein_coding Mus_musculus 0 3400
ENSMUST00000105711 Clcn6-002 nonsense_mediated_decay Mus_musculus 0 2813
ENSMUST00000134377 Clcn6-004 processed_transcript Mus_musculus 0 468
ENSMUST00000131232 Clcn6-003 nonsense_mediated_decay Mus_musculus 0 296

Loading