C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chloride channel 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029016 Clcn6 10090 - 4:148004259-148038821 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030879 Clcn6-201 148006134-148038813 protein_coding
  ENSMUST00000105711 Clcn6-002 148006589-148038770 nonsense_mediated_decay
  ENSMUST00000131232 Clcn6-003 148026582-148038562 nonsense_mediated_decay
  ENSMUST00000134377 Clcn6-004 148024435-148038763 processed_transcript
  ENSMUST00000137724 Clcn6-001 148004259-148038821 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030879ENSMUST00000105711ENSMUST00000134377ENSMUST00000137724
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030879 1.228±0.53 1.034±0.14 N/A 5.056±1.60 N/A 0.872±0.00 0.500±0.00 N/A N/A 2.011±0.00 0.368±0.10 2.587±0.78 3.897±0.00 N/A
ENSMUST00000105711 N/A 1.794±0.27 N/A N/A 1.848±0.06 0.786±0.29 N/A N/A 0.224±0.00 N/A N/A 2.007±0.34 N/A 0.253±0.00
ENSMUST00000134377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.143±0.00
ENSMUST00000137724 4.208±2.62 2.596±1.37 3.408±0.30 16.904±5.71 6.537±0.70 N/A 2.976±0.84 9.284±2.46 1.807±0.86 6.972±1.73 1.422±0.00 5.047±3.17 6.637±4.76 4.826±0.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087H CIL_00087H_0002 VISTA 4:147665245-148272946

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005247 IEA voltage-gated chloride channel activity
GO:0005524 IEA ATP binding
GO:0005765 IEA lysosomal membrane
GO:0005768 IEA endosome
GO:0006821 IEA chloride transport
GO:0009612 IEA response to mechanical stimulus
GO:0015297 IEA antiporter activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030554 IEA adenyl nucleotide binding
GO:0034220 IEA ion transmembrane transport
GO:0044070 IEA regulation of anion transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032577 clcn6 chloride channel 6 protein_coding Danio_rerio
ENSG00000011021 CLCN6 chloride channel, voltage-sensitive 6 protein_coding Homo_sapiens

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