C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CD6 molecule
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000013725 CD6 9606 + 11:60971680-61020377 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000313421 CD6-001 60971680-61020377 protein_coding
  ENST00000344931 CD6-004 60971746-61020338 nonsense_mediated_decay
  ENST00000352009 CD6-008 60971866-61019321 protein_coding
  ENST00000419282 CD6-016 61015421-61017549 retained_intron
  ENST00000433107 CD6-006 60971866-61017843 protein_coding
  ENST00000452451 CD6-007 60971866-61019321 protein_coding
  ENST00000505761 CD6-014 61016903-61020374 retained_intron
  ENST00000538288 CD6-011 61004411-61007713 processed_transcript
  ENST00000538611 CD6-013 61008534-61013955 protein_coding
  ENST00000541964 CD6-012 61008351-61009636 retained_intron
  ENST00000542157 CD6-005 60971866-61013476 protein_coding
  ENST00000542254 CD6-009 60971736-61007712 nonsense_mediated_decay
  ENST00000545105 CD6-015 60971738-61014011 processed_transcript
  ENST00000545320 CD6-010 60971750-60989392 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000313421ENST00000344931ENST00000352009ENST00000419282ENST00000433107ENST00000452451ENST00000505761ENST00000542157ENST00000542254ENST00000545105
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000313421 N/A 6.570±0.00 N/A 0.310±0.06 0.134±0.00 N/A 0.105±0.01 N/A 2.648±2.49 N/A 1.247±0.00 0.442±0.18 0.237±0.00
ENST00000344931 N/A N/A N/A N/A N/A N/A N/A 0.096±0.00 1.400±0.00 N/A 0.024±0.00 0.090±0.00 N/A
ENST00000352009 N/A N/A 0.109±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000419282 0.358±0.00 N/A 1.233±0.00 1.012±0.00 N/A N/A 0.636±0.00 0.455±0.02 N/A 0.043±0.00 N/A N/A 0.910±0.00
ENST00000433107 N/A N/A 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452451 N/A N/A N/A N/A N/A N/A N/A 0.133±0.00 N/A N/A N/A N/A N/A
ENST00000505761 N/A N/A N/A N/A N/A 0.052±0.00 N/A N/A N/A 0.064±0.00 N/A N/A 0.090±0.02
ENST00000542157 N/A N/A N/A N/A N/A N/A N/A 0.426±0.00 N/A N/A N/A N/A N/A
ENST00000542254 N/A N/A N/A N/A N/A N/A N/A 0.433±0.00 N/A N/A N/A N/A N/A
ENST00000545105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.310±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005044 IEA scavenger receptor activity
GO:0005515 IPI protein binding
GO:0005887 TAS integral component of plasma membrane
GO:0006898 IEA receptor-mediated endocytosis
GO:0007155 IEA cell adhesion
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075723 CD6 CD6 molecule protein_coding Danio_rerio
ENSMUSG00000024670 Cd6 CD6 antigen protein_coding Mus_musculus

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