C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CD6 antigen
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024670 Cd6 10090 - 19:10789341-10830058 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025572 Cd6-005 10789346-10798744 retained_intron
  ENSMUST00000039043 Cd6-004 10789349-10829964 protein_coding
  ENSMUST00000080292 Cd6-001 10789341-10830058 protein_coding
  ENSMUST00000173613 Cd6-007 10790986-10792988 retained_intron
  ENSMUST00000174176 Cd6-006 10794564-10829856 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025572ENSMUST00000039043ENSMUST00000080292ENSMUST00000173613ENSMUST00000174176
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025572 0.008±0.00 N/A N/A 0.021±0.02 5.239±0.00 N/A 0.133±0.00 N/A 0.011±0.00 N/A 0.037±0.02 0.062±0.04 0.059±0.00 0.024±0.00
ENSMUST00000039043 0.092±0.00 0.046±0.00 N/A N/A 1.910±0.63 0.062±0.00 0.078±0.00 0.080±0.00 0.030±0.02 0.218±0.06 N/A 0.042±0.01 0.136±0.14 0.010±0.00
ENSMUST00000080292 0.149±0.10 0.169±0.02 0.127±0.00 0.074±0.00 12.519±4.12 0.404±0.09 0.073±0.02 0.574±0.37 0.114±0.06 1.034±0.12 0.143±0.00 0.133±0.04 0.268±0.24 N/A
ENSMUST00000173613 N/A N/A N/A N/A N/A 0.563±0.00 N/A N/A N/A N/A 0.132±0.00 0.194±0.03 N/A N/A
ENSMUST00000174176 N/A 0.066±0.00 N/A N/A N/A 0.255±0.00 0.147±0.00 0.095±0.00 0.065±0.00 N/A 0.066±0.00 0.306±0.20 0.517±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005044 IEA scavenger receptor activity
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0006898 IEA receptor-mediated endocytosis
GO:0007155 IEA cell adhesion
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075723 CD6 CD6 molecule protein_coding Danio_rerio
ENSG00000013725 CD6 CD6 molecule protein_coding Homo_sapiens

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