C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 38, member 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000017483 SLC38A5 9606 - X:48458537-48470256 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000413668 SLC38A5-003 48462122-48468388 protein_coding
  ENST00000416711 SLC38A5-001 48462898-48469017 protein_coding
  ENST00000429543 SLC38A5-007 48466015-48470243 protein_coding
  ENST00000440085 SLC38A5-004 48461731-48468311 protein_coding
  ENST00000441948 SLC38A5-002 48461752-48468557 protein_coding
  ENST00000480105 SLC38A5-005 48459220-48460977 retained_intron
  ENST00000488083 SLC38A5-009 48466015-48469557 protein_coding
  ENST00000494034 SLC38A5-008 48460986-48466872 nonsense_mediated_decay
  ENST00000497336 SLC38A5-010 48458545-48467060 processed_transcript
  ENST00000595796 SLC38A5-011 48458537-48470177 protein_coding
  ENST00000615300 SLC38A5-006 48458693-48460854 retained_intron
  ENST00000619100 SLC38A5-012 48458539-48467493 protein_coding
  ENST00000620913 SLC38A5-201 48458537-48470256 protein_coding
  ENST00000622196 SLC38A5-202 48458539-48467493 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000413668ENST00000429543ENST00000440085ENST00000488083ENST00000494034ENST00000497336ENST00000595796ENST00000615300ENST00000619100ENST00000620913ENST00000622196
Transcript ID Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000413668 N/A N/A N/A N/A 1.086±0.00 N/A N/A N/A 0.765±0.00 N/A N/A
ENST00000429543 N/A 2.174±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440085 N/A 0.961±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488083 N/A N/A 0.702±0.00 N/A N/A N/A N/A N/A 0.717±0.00 0.399±0.00 N/A
ENST00000494034 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.255±0.00
ENST00000497336 N/A N/A N/A N/A N/A 0.174±0.00 N/A 0.657±0.00 N/A N/A 0.944±0.00
ENST00000595796 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.067±0.00
ENST00000615300 7.290±0.00 0.976±0.00 0.914±0.19 1.784±0.00 N/A N/A N/A 2.377±0.00 2.021±0.77 1.351±0.00 0.440±0.00
ENST00000619100 N/A N/A 0.169±0.00 0.137±0.00 N/A 0.330±0.00 2.478±2.25 N/A 0.336±0.17 0.404±0.17 N/A
ENST00000620913 2.864±0.00 2.413±0.00 0.901±0.00 N/A N/A N/A 1.294±0.79 0.060±0.00 0.950±0.78 0.529±0.00 N/A
ENST00000622196 N/A N/A 0.157±0.00 0.638±0.00 N/A N/A N/A N/A N/A 0.209±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003333 IEA amino acid transmembrane transport
GO:0005886 TAS plasma membrane
GO:0006811 TAS ion transport
GO:0006865 TAS amino acid transport
GO:0015171 IEA amino acid transmembrane transporter activity
GO:0015175 IEA neutral amino acid transmembrane transporter activity
GO:0015187 IEA glycine transmembrane transporter activity
GO:0015804 IEA neutral amino acid transport
GO:0015816 IEA glycine transport
GO:0016021 IEA integral component of membrane
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009901 slc38a5a solute carrier family 38, member 5a protein_coding Danio_rerio
ENSDARG00000014587 slc38a5b solute carrier family 38, member 5b protein_coding Danio_rerio
ENSMUSG00000031170 Slc38a5 solute carrier family 38, member 5 protein_coding Mus_musculus

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