C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RUN and FYVE domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000018189 RUFY3 9606 + 4:70704204-70807315 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000226328 RUFY3-001 70722011-70793557 protein_coding
  ENST00000381006 RUFY3-002 70721995-70807315 protein_coding
  ENST00000417478 RUFY3-005 70704801-70790082 protein_coding
  ENST00000502653 RUFY3-003 70734434-70807102 protein_coding
  ENST00000503025 RUFY3-010 70794673-70806567 retained_intron
  ENST00000503876 RUFY3-007 70704424-70768622 protein_coding
  ENST00000504805 RUFY3-009 70784866-70800182 nonsense_mediated_decay
  ENST00000507333 RUFY3-015 70793876-70806816 processed_transcript
  ENST00000512103 RUFY3-012 70788939-70806871 nonsense_mediated_decay
  ENST00000512331 RUFY3-016 70799405-70806748 processed_transcript
  ENST00000513593 RUFY3-013 70802983-70806794 processed_transcript
  ENST00000513597 RUFY3-004 70734346-70775206 protein_coding
  ENST00000514898 RUFY3-008 70704204-70705230 protein_coding
  ENST00000515442 RUFY3-014 70802871-70806596 processed_transcript
  ENST00000515479 RUFY3-011 70799448-70806553 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000226328ENST00000381006ENST00000417478ENST00000502653ENST00000504805
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000226328 2.052±0.00 N/A 1.665±0.00 21.085±11.31 1.097±0.00 N/A 0.961±0.00 0.742±0.00 N/A 3.482±0.00 1.087±0.00 3.300±0.00 N/A 4.878±0.00
ENST00000381006 2.046±0.00 N/A 1.139±0.00 N/A 1.217±0.00 2.096±0.00 0.880±0.03 1.306±0.00 4.316±0.00 1.514±0.00 N/A 5.644±1.09 1.170±0.00 N/A
ENST00000417478 N/A 2.538±0.00 N/A N/A N/A 2.398±0.00 1.143±0.00 N/A N/A 2.432±0.00 N/A N/A N/A N/A
ENST00000502653 1.779±0.00 N/A 1.390±0.00 N/A N/A N/A 0.906±0.00 2.039±0.00 0.907±0.00 N/A 1.664±0.00 7.021±0.00 3.815±2.13 24.278±0.00
ENST00000504805 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.367±0.00 9.535±0.00 9.312±0.00 36.614±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000D6 CIL_0000D6_0001 CGP 4:70688479-70807315
CIL_0005LT CIL_0005LT_0002 CGP 4:70704204-70839945

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0030175 ISS filopodium
GO:0030426 ISS growth cone
GO:0046872 IEA metal ion binding
GO:0050771 ISS negative regulation of axonogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029692 rufy3 RUN and FYVE domain containing 3 protein_coding Danio_rerio
ENSMUSG00000029291 Rufy3 RUN and FYVE domain containing 3 protein_coding Mus_musculus

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