C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: bromodomain containing 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000028310 BRD9 9606 - 5:850291-892824 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000466684 BRD9-003 876109-892559 nonsense_mediated_decay
  ENST00000467963 BRD9-001 864273-892824 protein_coding
  ENST00000475706 BRD9-010 870288-883407 retained_intron
  ENST00000483173 BRD9-004 864123-892546 protein_coding
  ENST00000483234 BRD9-008 863741-879315 retained_intron
  ENST00000487688 BRD9-011 889043-892522 nonsense_mediated_decay
  ENST00000489093 BRD9-012 883940-891550 protein_coding
  ENST00000489816 BRD9-005 863745-892522 nonsense_mediated_decay
  ENST00000490814 BRD9-006 863741-891797 nonsense_mediated_decay
  ENST00000493082 BRD9-014 850291-880098 retained_intron
  ENST00000494422 BRD9-013 878355-886907 processed_transcript
  ENST00000495265 BRD9-002 863741-892800 nonsense_mediated_decay
  ENST00000495794 BRD9-007 863741-890046 retained_intron
  ENST00000497410 BRD9-009 863741-866501 retained_intron
  ENST00000518250 BRD9-019 865414-870553 nonsense_mediated_decay
  ENST00000518251 BRD9-017 868749-878440 nonsense_mediated_decay
  ENST00000519112 BRD9-016 864423-878487 nonsense_mediated_decay
  ENST00000519838 BRD9-015 876160-883369 processed_transcript
  ENST00000523139 BRD9-018 868702-876203 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000467963ENST00000475706ENST00000483173ENST00000483234ENST00000487688ENST00000489093ENST00000495265ENST00000495794ENST00000497410
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000467963 N/A N/A N/A N/A N/A N/A 0.453±0.00 N/A N/A 1.981±0.00 N/A 10.207±7.22 4.467±2.17 11.873±0.00
ENST00000475706 N/A N/A N/A N/A N/A N/A N/A 4.096±0.00 N/A N/A N/A N/A N/A N/A
ENST00000483173 3.371±0.00 N/A 1.145±0.00 3.282±0.00 4.263±0.12 N/A 2.250±1.87 2.002±0.00 1.549±0.00 N/A 3.044±0.00 N/A N/A N/A
ENST00000483234 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.557±0.00 0.543±0.00 7.774±0.00 N/A N/A
ENST00000487688 N/A N/A 2.443±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.006±0.00 N/A N/A 24.115±0.00
ENST00000495265 2.101±0.00 4.539±0.00 N/A 3.887±0.00 4.760±0.00 N/A 2.918±0.00 3.161±0.00 1.136±0.00 3.185±0.00 4.781±0.00 5.287±1.07 2.996±1.60 10.344±0.00
ENST00000495794 0.739±0.00 1.743±0.00 1.276±0.00 1.609±0.00 2.159±0.00 1.646±0.00 N/A 1.191±0.00 0.798±0.00 1.187±0.15 N/A 4.525±3.88 N/A N/A
ENST00000497410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.977±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006W3 CIL_0006W3_0002 CGP 5:795606-892824
CIL_0006VW CIL_0006VW_0002 CGP 5:850291-919357

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 NAS nucleic acid binding
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0016568 IEA chromatin modification
GO:0070577 IDA lysine-acetylated histone binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017143 brd9 bromodomain containing 9 protein_coding Danio_rerio
ENSMUSG00000057649 Brd9 bromodomain containing 9 protein_coding Mus_musculus

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