C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger, CCHC domain containing 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000033030 ZCCHC8 9606 - 12:122472870-122500595 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000536306 ZCCHC8-003 122472870-122499325 protein_coding
  ENST00000536663 ZCCHC8-006 122477917-122500248 protein_coding
  ENST00000538116 ZCCHC8-005 122472893-122478533 protein_coding
  ENST00000538493 ZCCHC8-009 122482002-122483690 retained_intron
  ENST00000540586 ZCCHC8-004 122481991-122500520 protein_coding
  ENST00000542892 ZCCHC8-008 122473940-122481422 protein_coding
  ENST00000543897 ZCCHC8-002 122472870-122500595 protein_coding
  ENST00000544054 ZCCHC8-007 122477838-122484162 protein_coding
  ENST00000546149 ZCCHC8-010 122481522-122482458 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000536306ENST00000536663ENST00000538116ENST00000542892ENST00000543897ENST00000544054
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000536306 0.974±0.00 N/A 0.562±0.00 0.803±0.00 0.564±0.31 1.276±0.43 1.106±0.12 N/A 1.421±0.00 2.966±0.00 0.895±0.13 1.792±0.00
ENST00000536663 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.566±0.00
ENST00000538116 N/A 3.631±0.00 1.166±0.00 1.747±0.00 0.977±0.00 2.961±0.00 1.977±0.00 3.006±0.00 1.866±1.12 5.217±1.97 3.136±1.55 4.108±2.04
ENST00000542892 N/A N/A N/A N/A N/A N/A 1.152±0.00 N/A N/A N/A N/A N/A
ENST00000543897 N/A 0.914±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544054 N/A N/A N/A N/A 0.519±0.00 0.715±0.00 N/A N/A 1.587±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZD CIL_0002ZD_0001 CGP 12:122271432-122500595
CIL_0002PD CIL_0002PD_0001 CGP 12:122472870-122527000

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0008270 IEA zinc ion binding
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034982 zcchc8 zinc finger, CCHC domain containing 8 protein_coding Danio_rerio
ENSMUSG00000029427 Zcchc8 zinc finger, CCHC domain containing 8 protein_coding Mus_musculus

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