C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 19A, RBR E3 ubiquitin protein ligase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000034677 RNF19A 9606 - 8:100257059-100410015 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000341084 RNF19A-001 100257342-100310327 protein_coding
  ENST00000432381 RNF19A-004 100287907-100303230 protein_coding
  ENST00000517584 RNF19A-002 100287907-100303230 protein_coding
  ENST00000519342 RNF19A-011 100300578-100310148 processed_transcript
  ENST00000519449 RNF19A-003 100257060-100303259 protein_coding
  ENST00000519527 RNF19A-009 100287678-100336185 protein_coding
  ENST00000520071 RNF19A-005 100261723-100264580 retained_intron
  ENST00000520903 RNF19A-006 100258885-100260040 retained_intron
  ENST00000522182 RNF19A-008 100300543-100336218 processed_transcript
  ENST00000522369 RNF19A-010 100287835-100336204 protein_coding
  ENST00000523167 RNF19A-012 100287705-100309526 protein_coding
  ENST00000523255 RNF19A-007 100259063-100268920 processed_transcript
  ENST00000523481 RNF19A-015 100288131-100309910 protein_coding
  ENST00000523644 RNF19A-014 100259164-100264080 processed_transcript
  ENST00000524233 RNF19A-013 100268604-100275034 retained_intron
  ENST00000616528 RNF19A-201 100257059-100410015 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341084ENST00000519449ENST00000616528
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341084 2.966±0.00 3.605±0.00 2.234±0.00 3.829±1.48 4.622±0.90 2.742±0.51 2.251±0.61 2.292±0.17 3.892±3.29 4.700±0.26 1.288±0.23 2.719±0.26 1.293±0.34 6.165±0.00
ENST00000519449 N/A N/A N/A 1.361±0.00 N/A 3.028±0.00 N/A 2.134±0.00 N/A N/A 0.896±0.00 N/A N/A N/A
ENST00000616528 5.725±0.00 4.785±0.00 N/A 7.989±1.19 4.405±0.00 4.177±0.00 3.951±0.89 3.301±0.00 4.093±2.98 4.390±1.14 1.048±0.00 8.015±3.71 3.333±1.22 13.597±0.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000533 CIL_000533_0002 CGP 8:100150584-100259278
CIL_00000Q CIL_00000Q_0001 CGP 8:100157906-100410015

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000226 TAS microtubule cytoskeleton organization
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005813 TAS centrosome
GO:0008134 TAS transcription factor binding
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000022280 Rnf19a ring finger protein 19A protein_coding Mus_musculus

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