C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 19A, RBR E3 ubiquitin protein ligase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000341084 RNF19A-001 ENSG00000034677 9606 - 8:100257342-100310327 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341084
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341084 2.966±0.00 3.605±0.00 2.234±0.00 3.829±1.48 4.622±0.90 2.742±0.51 2.251±0.61 2.292±0.17 3.892±3.29 4.700±0.26 1.288±0.23 2.719±0.26 1.293±0.34 6.165±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000533 CIL_000533_0002 CGP 8:100150584-100259278
CIL_00000Q CIL_00000Q_0001 CGP 8:100157906-100410015

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 TAS microtubule cytoskeleton organization
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005813 TAS centrosome
GO:0008134 TAS transcription factor binding
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022890 Rnf19a-201 protein_coding Mus_musculus 0 3548
ENSMUST00000190330 RP23-252B13.1-001 transcribed_processed_pseudogene Mus_musculus 0 2272
ENSMUST00000185917 RP23-252B13.1-002 processed_transcript Mus_musculus 0 640

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