C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: superkiller viralicidic activity 2-like 2 (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000039123 SKIV2L2 9606 + 5:55307760-55425581 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000230640 SKIV2L2-001 55307760-55425581 protein_coding
  ENST00000502953 SKIV2L2-008 55327530-55343372 retained_intron
  ENST00000503165 SKIV2L2-006 55308010-55329407 processed_transcript
  ENST00000504388 SKIV2L2-004 55308001-55324705 processed_transcript
  ENST00000504997 SKIV2L2-005 55308069-55347129 processed_transcript
  ENST00000505565 SKIV2L2-007 55322327-55344620 nonsense_mediated_decay
  ENST00000506750 SKIV2L2-002 55308001-55425106 nonsense_mediated_decay
  ENST00000508716 SKIV2L2-003 55416056-55424985 protein_coding
  ENST00000518955 SKIV2L2-009 55405252-55416129 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000230640ENST00000503165ENST00000504997ENST00000506750
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000230640 N/A N/A N/A 1.546±0.00 N/A N/A 1.462±0.00 N/A 3.123±0.00 1.605±0.00 2.116±0.00 2.728±0.45 2.628±0.00 N/A
ENST00000503165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.517±0.00 N/A N/A
ENST00000504997 N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.352±0.00 N/A N/A N/A N/A
ENST00000506750 10.889±0.00 8.786±0.00 4.263±0.00 6.452±2.09 7.070±0.81 7.800±2.27 5.354±2.03 7.224±2.38 4.862±0.90 5.257±2.06 4.805±1.31 7.634±1.80 5.842±0.84 22.066±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007G0 CIL_0007G0_0002 CGP 5:55256245-55425581

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000178 IDA exosome (RNase complex)
GO:0000398 IC mRNA splicing, via spliceosome
GO:0000460 IMP maturation of 5.8S rRNA
GO:0003676 IEA nucleic acid binding
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0016817 IEA hydrolase activity, acting on acid anhydrides
GO:0016818 IEA hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013457 skiv2l2 superkiller viralicidic activity 2-like 2 protein_coding Danio_rerio
ENSMUSG00000016018 Skiv2l2 superkiller viralicidic activity 2-like 2 (S. cerevisiae) protein_coding Mus_musculus

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