C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 65, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000039523 FAM65A 9606 + 16:67518418-67546788 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000042381 FAM65A-001 67528870-67546786 protein_coding
  ENST00000379312 FAM65A-002 67528817-67546786 protein_coding
  ENST00000422602 FAM65A-201 67529637-67546785 protein_coding
  ENST00000428437 FAM65A-006 67537454-67546788 protein_coding
  ENST00000540839 FAM65A-003 67528881-67546786 protein_coding
  ENST00000561534 FAM65A-024 67538965-67541578 retained_intron
  ENST00000562116 FAM65A-004 67518418-67538471 protein_coding
  ENST00000562755 FAM65A-007 67528288-67539021 protein_coding
  ENST00000564616 FAM65A-018 67542999-67543826 retained_intron
  ENST00000565176 FAM65A-023 67531548-67540094 protein_coding
  ENST00000565190 FAM65A-020 67545372-67546067 retained_intron
  ENST00000565679 FAM65A-019 67545537-67546005 retained_intron
  ENST00000566522 FAM65A-010 67528867-67540704 processed_transcript
  ENST00000566559 FAM65A-005 67538078-67542668 protein_coding
  ENST00000566730 FAM65A-014 67540125-67541577 retained_intron
  ENST00000566815 FAM65A-013 67538464-67541578 nonsense_mediated_decay
  ENST00000566907 FAM65A-008 67529347-67538544 protein_coding
  ENST00000566920 FAM65A-009 67529791-67538996 protein_coding
  ENST00000568959 FAM65A-022 67544394-67545797 protein_coding
  ENST00000569179 FAM65A-021 67540353-67541713 protein_coding
  ENST00000569253 FAM65A-011 67537473-67542665 protein_coding
  ENST00000569474 FAM65A-015 67539865-67541758 retained_intron
  ENST00000569733 FAM65A-017 67541347-67546786 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000042381ENST00000379312ENST00000428437ENST00000561534ENST00000565176ENST00000565190ENST00000566522ENST00000566559ENST00000566815ENST00000568959ENST00000569253
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000042381 10.304±0.00 12.614±0.00 2.335±0.00 13.031±0.00 6.886±0.00 7.075±0.00 9.886±0.00 15.697±0.00 2.331±0.23 14.533±0.00 9.426±8.95 13.231±6.50 11.048±4.31 5.829±3.44
ENST00000379312 N/A N/A N/A N/A N/A 0.385±0.00 2.393±1.64 N/A N/A N/A N/A 0.570±0.00 N/A N/A
ENST00000428437 11.977±0.00 12.646±0.00 N/A N/A 5.302±0.00 4.261±0.00 3.539±0.00 N/A 1.631±0.00 6.636±5.77 N/A 5.671±3.46 12.053±1.48 3.873±0.00
ENST00000561534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.665±0.00 N/A N/A N/A
ENST00000565176 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.930±0.00 N/A N/A
ENST00000565190 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.897±0.00 N/A N/A
ENST00000566522 N/A N/A N/A N/A 8.519±0.00 N/A N/A N/A N/A 6.927±0.00 N/A 8.953±6.67 26.562±0.00 11.217±0.00
ENST00000566559 N/A N/A N/A N/A 1.973±0.00 0.975±0.00 N/A N/A 1.718±0.00 N/A 0.482±0.00 N/A N/A N/A
ENST00000566815 N/A N/A N/A N/A N/A N/A 1.399±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000568959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 27.127±0.00 39.406±0.00 16.468±0.00
ENST00000569253 N/A N/A 4.290±0.00 13.307±0.00 N/A N/A 1.340±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001GR CIL_0001GR_0001 CGP 16:67482571-67546788
CIL_0003LR CIL_0003LR_0002 CGP 16:67518418-67639183

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005488 IEA binding
GO:0005737 ISS cytoplasm
GO:0007165 IEA signal transduction
GO:0008150 ND biological_process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062178 fam65a family with sequence similarity 65, member A protein_coding Danio_rerio
ENSMUSG00000038604 Fam65a family with sequence similarity 65, member A protein_coding Mus_musculus

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