C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: histone deacetylase 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000048052 HDAC9 9606 + 7:18086949-19002416 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000401921 HDAC9-017 18496262-18996197 protein_coding
  ENST00000405010 HDAC9-002 18495746-18668843 protein_coding
  ENST00000406072 HDAC9-004 18496167-18668843 protein_coding
  ENST00000406451 HDAC9-001 18495746-19002416 protein_coding
  ENST00000411993 HDAC9-026 18290188-18327758 processed_transcript
  ENST00000413380 HDAC9-011 18495710-18591544 protein_coding
  ENST00000413509 HDAC9-008 18290422-18590486 protein_coding
  ENST00000417496 HDAC9-005 18086949-18666923 protein_coding
  ENST00000425071 HDAC9-027 18151775-18327612 processed_transcript
  ENST00000428307 HDAC9-025 18495756-18667105 protein_coding
  ENST00000430454 HDAC9-010 18495715-18590376 protein_coding
  ENST00000432645 HDAC9-023 18496303-18954316 protein_coding
  ENST00000433709 HDAC9-006 18290092-18585326 protein_coding
  ENST00000441542 HDAC9-021 18496303-18996062 protein_coding
  ENST00000441986 HDAC9-013 18496497-18591533 protein_coding
  ENST00000446646 HDAC9-012 18496176-18591544 nonsense_mediated_decay
  ENST00000455069 HDAC9-028 18087883-18162628 retained_intron
  ENST00000456174 HDAC9-015 18509273-18666900 protein_coding
  ENST00000461159 HDAC9-016 18290422-18829392 retained_intron
  ENST00000461409 HDAC9-009 18495761-18506036 processed_transcript
  ENST00000471887 HDAC9-014 18502608-18518071 processed_transcript
  ENST00000474742 HDAC9-007 18290450-18496746 processed_transcript
  ENST00000476135 HDAC9-003 18495739-18590354 processed_transcript
  ENST00000483142 HDAC9-019 18835909-18907034 processed_transcript
  ENST00000490851 HDAC9-020 18793159-18997299 retained_intron
  ENST00000496026 HDAC9-018 18851400-18996343 processed_transcript
  ENST00000523867 HDAC9-024 18496303-18835649 retained_intron
  ENST00000524023 HDAC9-022 18509313-18666979 protein_coding
  ENST00000622668 HDAC9-201 18495746-18668837 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000405010ENST00000406072ENST00000406451ENST00000413509ENST00000417496ENST00000428307ENST00000456174ENST00000476135ENST00000523867ENST00000622668
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000405010 2.713±0.00 N/A 2.069±0.00 0.859±0.00 1.384±0.00 N/A 0.112±0.00 0.420±0.35 N/A 0.669±0.00 0.327±0.00 N/A N/A
ENST00000406072 N/A 0.114±0.00 N/A 1.286±0.00 N/A 0.928±0.13 0.079±0.00 N/A 1.305±0.00 N/A 0.521±0.00 0.712±0.10 0.457±0.00
ENST00000406451 N/A N/A 1.662±0.00 N/A N/A 0.287±0.14 N/A 0.384±0.00 N/A N/A N/A N/A N/A
ENST00000413509 N/A N/A N/A N/A N/A 4.147±0.00 N/A 4.702±0.00 N/A N/A N/A N/A N/A
ENST00000417496 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.868±0.00
ENST00000428307 N/A 0.354±0.00 N/A N/A N/A N/A N/A N/A N/A 0.425±0.00 N/A N/A N/A
ENST00000456174 N/A N/A N/A 1.575±0.00 N/A N/A N/A 0.214±0.00 N/A N/A N/A N/A N/A
ENST00000476135 N/A N/A N/A N/A N/A N/A 0.391±0.00 N/A N/A 2.189±0.00 N/A N/A N/A
ENST00000523867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.852±0.00
ENST00000622668 N/A N/A 0.812±0.00 N/A N/A N/A 0.246±0.00 N/A N/A N/A 0.260±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000118 TAS:IEA histone deacetylase complex
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003714 ISS transcription corepressor activity
GO:0004407 IDA:IEA histone deacetylase activity
GO:0005080 IPI protein kinase C binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IDA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006954 TAS inflammatory response
GO:0007219 TAS Notch signaling pathway
GO:0007507 ISS heart development
GO:0008134 IPI transcription factor binding
GO:0016568 IEA chromatin modification
GO:0016575 IDA histone deacetylation
GO:0030183 TAS B cell differentiation
GO:0032041 IEA NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0032869 IDA cellular response to insulin stimulus
GO:0033558 IDA protein deacetylase activity
GO:0034983 IDA peptidyl-lysine deacetylation
GO:0035097 ISS histone methyltransferase complex
GO:0042113 TAS B cell activation
GO:0042826 IDA histone deacetylase binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0046969 IEA NAD-dependent histone deacetylase activity (H3-K9 specific)
GO:0046970 IEA NAD-dependent histone deacetylase activity (H4-K16 specific)
GO:0048742 ISS regulation of skeletal muscle fiber development
GO:0051153 ISS regulation of striated muscle cell differentiation
GO:0070491 ISS repressing transcription factor binding
GO:0070932 IDA histone H3 deacetylation
GO:0070933 IDA histone H4 deacetylation
GO:0090050 IMP positive regulation of cell migration involved in sprouting angiogenesis
GO:0097372 IEA NAD-dependent histone deacetylase activity (H3-K18 specific)

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056642 hdac9b histone deacetylase 9b protein_coding Danio_rerio
ENSMUSG00000004698 Hdac9 histone deacetylase 9 protein_coding Mus_musculus

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