C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone deacetylase 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000405010 HDAC9-002 ENSG00000048052 9606 + 7:18495746-18668843 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLiverMuscleOvaryENST00000405010
Transcript ID Adrenal Brain Breast Colon Kidney Liver Muscle Ovary
ENST00000405010 2.713±0.00 2.069±0.00 0.859±0.00 1.384±0.00 0.112±0.00 0.420±0.35 0.669±0.00 0.327±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 TAS histone deacetylase complex
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003714 ISS transcription corepressor activity
GO:0004407 IDA histone deacetylase activity
GO:0005080 IPI protein kinase C binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IDA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006954 TAS inflammatory response
GO:0007219 TAS Notch signaling pathway
GO:0007507 ISS heart development
GO:0008134 IPI transcription factor binding
GO:0016575 IDA histone deacetylation
GO:0030183 TAS B cell differentiation
GO:0032041 IEA NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0032869 IDA cellular response to insulin stimulus
GO:0033558 IDA protein deacetylase activity
GO:0034983 IDA peptidyl-lysine deacetylation
GO:0035097 ISS histone methyltransferase complex
GO:0042113 TAS B cell activation
GO:0042826 IDA histone deacetylase binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0046969 IEA NAD-dependent histone deacetylase activity (H3-K9 specific)
GO:0046970 IEA NAD-dependent histone deacetylase activity (H4-K16 specific)
GO:0048742 ISS regulation of skeletal muscle fiber development
GO:0051153 ISS regulation of striated muscle cell differentiation
GO:0070491 ISS repressing transcription factor binding
GO:0070932 IDA histone H3 deacetylation
GO:0070933 IDA histone H4 deacetylation
GO:0090050 IMP positive regulation of cell migration involved in sprouting angiogenesis
GO:0097372 IEA NAD-dependent histone deacetylase activity (H3-K18 specific)

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110819 Hdac9-201 protein_coding Mus_musculus 0 2543

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