C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: histone deacetylase 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000004698 Hdac9 10090 - 12:34371503-34528889 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000110819 Hdac9-201 34371503-34528889 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110819
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110819 1.199±0.26 0.138±0.07 0.223±0.00 1.605±0.47 0.822±0.59 0.837±0.14 1.673±0.67 0.316±0.04 0.270±0.26 0.488±0.03 0.417±0.10 0.949±0.34 0.427±0.00 0.556±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LO CIL_0007LO_0002 UCNEbase 12:33675251-34394390
CIL_0008A9 CIL_0008A9_0002 VISTA 12:33899630-34500876
CIL_0008Z7 CIL_0008Z7_0002 VISTA 12:33915261-34516362
CIL_0008Z6 CIL_0008Z6_0002 VISTA 12:33919670-34521315

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000118 TAS histone deacetylase complex
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003714 IDA transcription corepressor activity
GO:0004407 TAS histone deacetylase activity
GO:0005080 IEA protein kinase C binding
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 TAS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006954 TAS inflammatory response
GO:0007399 TAS nervous system development
GO:0007507 IGI heart development
GO:0008134 TAS transcription factor binding
GO:0016568 TAS chromatin modification
GO:0016575 IEA histone deacetylation
GO:0030183 TAS B cell differentiation
GO:0032869 IEA cellular response to insulin stimulus
GO:0033558 IEA protein deacetylase activity
GO:0034983 IEA peptidyl-lysine deacetylation
GO:0035097 IDA histone methyltransferase complex
GO:0042113 TAS B cell activation
GO:0042826 IEA histone deacetylase binding
GO:0045843 TAS negative regulation of striated muscle tissue development
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0048742 IGI regulation of skeletal muscle fiber development
GO:0051153 IGI regulation of striated muscle cell differentiation
GO:0070491 IPI repressing transcription factor binding
GO:0070932 IEA histone H3 deacetylation
GO:0070933 IEA histone H4 deacetylation
GO:0090050 IEA positive regulation of cell migration involved in sprouting angiogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056642 hdac9b histone deacetylase 9b protein_coding Danio_rerio
ENSG00000048052 HDAC9 histone deacetylase 9 protein_coding Homo_sapiens

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