C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LETM1 domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000050426 LETMD1 9606 + 12:51047962-51060424 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262055 LETMD1-001 51048318-51060421 protein_coding
  ENST00000380135 LETMD1-010 51048344-51060363 nonsense_mediated_decay
  ENST00000418425 LETMD1-006 51048338-51060413 protein_coding
  ENST00000546814 LETMD1-030 51055880-51059534 retained_intron
  ENST00000546992 LETMD1-020 51048327-51052361 retained_intron
  ENST00000547008 LETMD1-008 51048341-51060369 protein_coding
  ENST00000547029 LETMD1-023 51048319-51058128 processed_transcript
  ENST00000547256 LETMD1-036 51049078-51059717 protein_coding
  ENST00000547318 LETMD1-002 51048301-51060409 nonsense_mediated_decay
  ENST00000547555 LETMD1-004 51048327-51060424 nonsense_mediated_decay
  ENST00000547660 LETMD1-027 51048327-51059412 protein_coding
  ENST00000547877 LETMD1-011 51048343-51060421 retained_intron
  ENST00000548209 LETMD1-024 51048327-51056428 protein_coding
  ENST00000548251 LETMD1-025 51048327-51056490 protein_coding
  ENST00000548390 LETMD1-018 51048327-51049430 retained_intron
  ENST00000548401 LETMD1-028 51048329-51052201 protein_coding
  ENST00000548516 LETMD1-032 51048358-51059659 processed_transcript
  ENST00000549340 LETMD1-019 51048321-51058048 protein_coding
  ENST00000549395 LETMD1-039 51056371-51059649 processed_transcript
  ENST00000549686 LETMD1-029 51048338-51059532 nonsense_mediated_decay
  ENST00000550100 LETMD1-009 51048344-51060303 nonsense_mediated_decay
  ENST00000550274 LETMD1-035 51056057-51059827 retained_intron
  ENST00000550442 LETMD1-034 51048320-51056391 protein_coding
  ENST00000550446 LETMD1-033 51048318-51056775 processed_transcript
  ENST00000550715 LETMD1-005 51048327-51056952 retained_intron
  ENST00000550755 LETMD1-021 51048318-51055977 nonsense_mediated_decay
  ENST00000550814 LETMD1-026 51048327-51058067 protein_coding
  ENST00000550929 LETMD1-003 51048318-51059805 protein_coding
  ENST00000551261 LETMD1-022 51048327-51055848 nonsense_mediated_decay
  ENST00000551477 LETMD1-015 51047962-51058087 protein_coding
  ENST00000551931 LETMD1-037 51055909-51059702 protein_coding
  ENST00000552430 LETMD1-016 51048313-51056237 processed_transcript
  ENST00000552433 LETMD1-031 51055699-51056529 retained_intron
  ENST00000552645 LETMD1-013 51048874-51060421 retained_intron
  ENST00000552739 LETMD1-012 51048346-51060401 protein_coding
  ENST00000553043 LETMD1-038 51056179-51059867 protein_coding
  ENST00000553175 LETMD1-017 51048317-51056221 processed_transcript
  ENST00000623495 LETMD1-014 51057471-51060418 TEC

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262055ENST00000546992ENST00000547008ENST00000547318ENST00000547555ENST00000547877ENST00000549395ENST00000549686ENST00000550100ENST00000552739ENST00000623495
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262055 21.833±0.00 N/A N/A 8.195±0.00 9.577±0.00 9.610±0.00 1.498±0.00 3.628±0.00 1.996±0.00 2.901±0.00 6.644±0.00 6.883±0.40 4.145±0.41 7.081±0.00
ENST00000546992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.320±0.00 N/A N/A N/A
ENST00000547008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.113±0.00 3.068±0.00 N/A
ENST00000547318 N/A N/A N/A 5.077±0.00 N/A N/A 1.954±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000547555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.161±0.00 N/A N/A
ENST00000547877 N/A N/A 4.419±0.00 5.881±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.614±0.00 N/A N/A N/A
ENST00000549686 N/A N/A N/A 32.022±0.00 12.813±0.00 15.646±0.00 3.802±0.00 N/A 10.667±0.00 7.915±0.00 N/A 10.330±0.00 13.225±0.00 17.889±0.00
ENST00000550100 N/A N/A N/A 9.263±0.00 10.058±0.00 18.077±0.00 3.035±0.00 7.876±0.00 N/A 8.872±0.00 0.945±0.00 12.843±0.00 5.559±1.23 8.771±0.00
ENST00000552739 N/A N/A N/A 6.831±0.00 6.103±0.00 N/A N/A N/A 2.270±0.00 4.490±0.00 5.397±0.00 9.851±1.67 3.186±0.00 4.759±0.74
ENST00000623495 N/A 6.796±0.00 3.199±0.00 N/A 2.499±0.00 3.157±0.00 N/A 2.664±0.65 N/A 2.678±0.00 0.843±0.00 3.304±1.62 N/A 3.305±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007B3 CIL_0007B3_0001 CGP 12:51047962-51083664

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005739 IEA mitochondrion
GO:0005741 IEA mitochondrial outer membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030641 LETMD1 LETM1 domain containing 1 protein_coding Danio_rerio
ENSMUSG00000037353 Letmd1 LETM1 domain containing 1 protein_coding Mus_musculus

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